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Template:STRUCTURE 3glf

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Revision as of 12:08, 25 July 2012

3glf, resolution 3.39Å ()

Ligands:

, , ,

Gene:

holA, b0640, JW0635 (Escherichia coli), dnaX, dnaZ, dnaZX, b0470, JW0459 (Escherichia coli), holB, b1099, JW1085 (Escherichia coli)

Activity:

DNA-directed DNA polymerase, with EC number 2.7.7.7

Related:

1sxj, 1jr3, 1xxh, 1xxi, 3glg, 3glh, 3gli

Structural annotation:
Resources:	CATH : 3Glfb01, 3Glfb02, 3Glfb03, 3Glfc03, 3Glfc02, 3Glfc01, 3Glfd03, 3Glfd01, 3Glfd02, 3Glfe01, 3Glfe03, 3Glfe02, 3Glfi01, 3Glfi02, 3Glfi03, 3Glfj03, 3Glfj02, 3Glfj01 InterPro : Ipr005790, Ipr008921, Ipr010372, Ipr012763, Ipr022754, Ipr021029, Ipr022001, Ipr001270, Ipr003593, Ipr004622, Ipr015199 Pfam : PF06144, PF12169, PF00004, PF09115

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_3glf"

@@ Line 1: / Line 1: @@
 {{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[3glf]], [[Resolution | resolution]] 3.39&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[3glf]], [[Resolution|resolution]] 3.39&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Adp+B+400'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Bef+B+401'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Adp+C+402'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Bef+C+403'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Adp+D+404'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Bef+D+405'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Adp+G+406'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+Bef+G+407'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Adp+H+408'>AC9</scene>, <scene name='pdbsite=BC1:Binding+Site+For+Residue+Bef+H+409'>BC1</scene>, <scene name='pdbsite=BC2:Binding+Site+For+Residue+Adp+I+410'>BC2</scene>, <scene name='pdbsite=BC3:Binding+Site+For+Residue+Bef+I+411'>BC3</scene>, <scene name='pdbsite=BC4:Binding+Site+For+Residue+Mg+B+412'>BC4</scene>, <scene name='pdbsite=BC5:Binding+Site+For+Residue+Mg+C+413'>BC5</scene>, <scene name='pdbsite=BC6:Binding+Site+For+Residue+Mg+D+414'>BC6</scene>, <scene name='pdbsite=BC7:Binding+Site+For+Residue+Mg+G+415'>BC7</scene>, <scene name='pdbsite=BC8:Binding+Site+For+Residue+Mg+H+416'>BC8</scene>, <scene name='pdbsite=BC9:Binding+Site+For+Residue+Mg+I+417'>BC9</scene>, <scene name='pdbsite=CC1:Binding+Site+For+Residue+Zn+B+418'>CC1</scene>, <scene name='pdbsite=CC2:Binding+Site+For+Residue+Zn+C+419'>CC2</scene>, <scene name='pdbsite=CC3:Binding+Site+For+Residue+Zn+D+420'>CC3</scene>, <scene name='pdbsite=CC4:Binding+Site+For+Residue+Zn+E+421'>CC4</scene>, <scene name='pdbsite=CC5:Binding+Site+For+Residue+Zn+G+422'>CC5</scene>, <scene name='pdbsite=CC6:Binding+Site+For+Residue+Zn+H+423'>CC6</scene>, <scene name='pdbsite=CC7:Binding+Site+For+Residue+Zn+I+424'>CC7</scene> and <scene name='pdbsite=CC8:Binding+Site+For+Residue+Zn+J+425'>CC8</scene>
 |LIGAND= <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=BEF:BERYLLIUM+TRIFLUORIDE+ION'>BEF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span>
 |GENE= holA, b0640, JW0635 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), dnaX, dnaZ, dnaZX, b0470, JW0459 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), holB, b1099, JW1085 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05574 holA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK07993 PRK07993], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK06581 PRK06581], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09115 DNApol3-delta_C]</span>
 |RELATEDENTRY=[[1sxj|1sxj]], [[1jr3|1jr3]], [[1xxh|1xxh]], [[1xxi|1xxi]], [[3glg|3glg]], [[3glh|3glh]], [[3gli|3gli]]
 |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3glf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3glf OCA], [http://www.ebi.ac.uk/pdbsum/3glf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3glf RCSB]</span>
+|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/3glfB01 3Glfb01], [http://www.cathdb.info/domain/3glfB02 3Glfb02], [http://www.cathdb.info/domain/3glfB03 3Glfb03], [http://www.cathdb.info/domain/3glfC03 3Glfc03], [http://www.cathdb.info/domain/3glfC02 3Glfc02], [http://www.cathdb.info/domain/3glfC01 3Glfc01], [http://www.cathdb.info/domain/3glfD03 3Glfd03], [http://www.cathdb.info/domain/3glfD01 3Glfd01], [http://www.cathdb.info/domain/3glfD02 3Glfd02], [http://www.cathdb.info/domain/3glfE01 3Glfe01], [http://www.cathdb.info/domain/3glfE03 3Glfe03], [http://www.cathdb.info/domain/3glfE02 3Glfe02], [http://www.cathdb.info/domain/3glfI01 3Glfi01], [http://www.cathdb.info/domain/3glfI02 3Glfi02], [http://www.cathdb.info/domain/3glfI03 3Glfi03], [http://www.cathdb.info/domain/3glfJ03 3Glfj03], [http://www.cathdb.info/domain/3glfJ02 3Glfj02], [http://www.cathdb.info/domain/3glfJ01 3Glfj01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005790 Ipr005790], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008921 Ipr008921], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010372 Ipr010372], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012763 Ipr012763], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR022754 Ipr022754], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR021029 Ipr021029], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR022001 Ipr022001], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001270 Ipr001270], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003593 Ipr003593], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004622 Ipr004622], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015199 Ipr015199]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF06144 PF06144], [http://pfam.sanger.ac.uk/family?acc=PF12169 PF12169], [http://pfam.sanger.ac.uk/family?acc=PF00004 PF00004], [http://pfam.sanger.ac.uk/family?acc=PF09115 PF09115]</span>
+|uPDB=3GLF|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
 }}

Template:STRUCTURE 3glf

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Revision as of 12:08, 25 July 2012

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