1f84
From Proteopedia
(New page: 200px<br /><applet load="1f84" size="450" color="white" frame="true" align="right" spinBox="true" caption="1f84" /> '''SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN II...) |
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caption="1f84" /> | caption="1f84" /> | ||
'''SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID'''<br /> | '''SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID'''<br /> | ||
==Overview== | ==Overview== | ||
| - | Translation of the hepatitis C virus (HCV) polyprotein is initiated at an | + | Translation of the hepatitis C virus (HCV) polyprotein is initiated at an internal ribosome entry site (IRES) element in the 5' untranslated region of HCV RNA. The HCV IRES element interacts directly with the 40S subunit, and biochemical experiments have implicated RNA elements near the AUG start codon as required for IRES-40S subunit complex formation. The data we present here show that two RNA stem loops, domains IIId and IIIe, are involved in IRES-40S subunit interaction. The structures of the two RNA domains were solved by NMR spectroscopy and reveal structural features that may explain their role in IRES function. |
==About this Structure== | ==About this Structure== | ||
| - | 1F84 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http:// | + | 1F84 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F84 OCA]. |
==Reference== | ==Reference== | ||
Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function., Lukavsky PJ, Otto GA, Lancaster AM, Sarnow P, Puglisi JD, Nat Struct Biol. 2000 Dec;7(12):1105-10. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11101890 11101890] | Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function., Lukavsky PJ, Otto GA, Lancaster AM, Sarnow P, Puglisi JD, Nat Struct Biol. 2000 Dec;7(12):1105-10. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11101890 11101890] | ||
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
| - | [[Category: Lancaster, A | + | [[Category: Lancaster, A M.]] |
| - | [[Category: Lukavsky, P | + | [[Category: Lukavsky, P J.]] |
| - | [[Category: Otto, G | + | [[Category: Otto, G A.]] |
| - | [[Category: Puglisi, J | + | [[Category: Puglisi, J D.]] |
[[Category: Sarnow, P.]] | [[Category: Sarnow, P.]] | ||
[[Category: hairpin loop]] | [[Category: hairpin loop]] | ||
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[[Category: sarcin/ricin loop]] | [[Category: sarcin/ricin loop]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:35:54 2008'' |
Revision as of 10:36, 21 February 2008
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SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID
Overview
Translation of the hepatitis C virus (HCV) polyprotein is initiated at an internal ribosome entry site (IRES) element in the 5' untranslated region of HCV RNA. The HCV IRES element interacts directly with the 40S subunit, and biochemical experiments have implicated RNA elements near the AUG start codon as required for IRES-40S subunit complex formation. The data we present here show that two RNA stem loops, domains IIId and IIIe, are involved in IRES-40S subunit interaction. The structures of the two RNA domains were solved by NMR spectroscopy and reveal structural features that may explain their role in IRES function.
About this Structure
1F84 is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function., Lukavsky PJ, Otto GA, Lancaster AM, Sarnow P, Puglisi JD, Nat Struct Biol. 2000 Dec;7(12):1105-10. PMID:11101890
Page seeded by OCA on Thu Feb 21 12:35:54 2008
