Proteopedia:Cookbook

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==Theoretical Models==
==Theoretical Models==
-
On pages describing theoretical model structures, please insert this on the top <nowiki>{{Theoretical_model}}</nowiki> to generate this banner:
+
On pages that largely or entirely concern theoretical model structures, please insert '''<nowiki>{{Theoretical_model}}</nowiki>''' in the top of the wikitext box. It will generate this banner:
{{Theoretical_model}}
{{Theoretical_model}}
 +
 +
If a page shows largely empirical models, but also one or more theoretical models, please put <font color='red'>Theoretical Model</font> in the text, and/or as a caption in Jmol whenever the model is theoretical:
 +
* The wikitext is: <nowiki>'''<font color='red'>Theoretical Model</font>'''</nowiki>
 +
* To add the red caption to a scene, use the "labels" tab in the ''Scene Authoring Tools'' and open the "caption" section.
 +
 +
Policy concerning theoretical models is at [[Proteopedia:Policy#Theoretical_Models]], where you will also find links to '''examples'''.
==Floating quote Box==
==Floating quote Box==

Revision as of 21:35, 8 November 2009

Contents

Rectangular Jmol Applets

jslibrary describes:
For a rectangular applet, an array containing two elements, width and height; this is usually easiest to do using JavaScript square bracket notation for array constants, as in [400, 200], ["50%", "100%"] or [0.5, 1.0]. Proteopedia currently only accepts integers, as in this example size='[800,200]'

Insert caption here

Drag the structure with the mouse to rotate

Quicktime .mov

<qt>file=film.mov|width=320|height=260|autoplay=true|loop=true</qt>

Shows the movie with the with a width of 320 and a height of 240 pixels that starts playing as soon as its loaded.

<qt>file=film.mov|width=320|height=240|autoplay=false|controller=true</qt>

Shows the movie with the with a width of 320 and a height of 240 pixels that does not play when loaded, but waits for the user to click on the play button.

Attribute Reference

  • width=px or % (Modify the width of the object)
  • height=px or a% (Modify the height of the object)
  • autoplay=true/false (Start playing the file or wait at first frame, default:true)
  • controller=true/false (Show the controller, default:true)
  • loop=true/false (Plays again and again, default:false)


[edit]

Quiz

The special implementation of Quiz in Proteopedia includes an email feedback to the teacher. See full explanation and examples on How To Use at Help:Quiz

<quiz display=simple>
{  
|type="{}"}
Name a famous Greek philosopher. 
{ Aristotle|Plato }

{Question
|type="[]"}
+ Correct answer.
- Incorrect answer.
+ Correct answer.
- Incorrect answer.
</quiz>

Imagemaps

In the image map below, clicking on the computer screen should lead you to 2ace, the keyboard to 1rat,
and the thinking balloon to Believe It or Not!. A click on the person's head goes to the external article on Student at Wikipedia.
The (i) goes to the image info.

2ace1rathttp://en.wikipedia.org/wiki/StudentBelieve It or Not!
picture of a fooAbout this image
<imagemap>
Image:Foo.jpg|200px|picture of a foo
poly 131 45 213 41 210 110 127 109 [[2ace]]
poly 104 126 105 171 269 162 267 124 [[1rat]]
rect 15 95 94 176   [http://en.wikipedia.org/wiki/Student]
# A comment, this line is ignored
circle 57 57 20    [[Believe_It_or_Not!]]
desc bottom-left
</imagemap>

Here's a nice tool for finding the coordinates in an image.

Theoretical Models

On pages that largely or entirely concern theoretical model structures, please insert {{Theoretical_model}} in the top of the wikitext box. It will generate this banner:

Theoretical Model: The protein structure described on this page was determined theoretically, and hence should be interpreted with caution.

If a page shows largely empirical models, but also one or more theoretical models, please put Theoretical Model in the text, and/or as a caption in Jmol whenever the model is theoretical:

  • The wikitext is: '''<font color='red'>Theoretical Model</font>'''
  • To add the red caption to a scene, use the "labels" tab in the Scene Authoring Tools and open the "caption" section.

Policy concerning theoretical models is at Proteopedia:Policy#Theoretical_Models, where you will also find links to examples.

Floating quote Box

Alice's Adventures in Wonderland by Lewis Carroll
Project Gutemberg

There was nothing so very remarkable in that; nor did Alice think it so very much out of the way to hear the Rabbit say to itself, `Oh dear! Oh dear! I shall be late!' (when she thought it over afterwards, it occurred to her that she ought to have wondered at this, but at the time it all seemed quite natural); but when the Rabbit actually took a watch out of its waistcoat-pocket, and looked at it, and then hurried on, Alice started to her feet, for it flashed across her mind that she had never before seen a rabbit with either a waistcoat-pocket, or a watch to take out of it, and burning with curiosity, she ran across the field after it, and fortunately was just in time to see it pop down a large rabbit-hole under the hedge.

{{Quote box
 | quote  =
 | source =
 | width  =
 | align  =
}}

Link external sites from Jmol applet's CAPTION

Template:STRUCTURE 1stf

Flash

This loads a local .swf file. The interactive feature works fine. Click buttons and slide controls to try. <swf width="400" height="300">/wiki/images/8/8c/7_scrolling.swf</swf>

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