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Proteopedia:Table of Contents
From Proteopedia
(Difference between revisions)
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* INTRODUCTION | * INTRODUCTION | ||
** Introduction to the Chemistry of Life | ** Introduction to the Chemistry of Life | ||
| + | |||
** WATER | ** WATER | ||
| + | |||
*** [[Water_in_macromolecular_models|Water in Macromolecular Models]] | *** [[Water_in_macromolecular_models|Water in Macromolecular Models]] | ||
** KEY CHEMICAL CONCEPTS FOR STRUCTURAL BIOLOGY | ** KEY CHEMICAL CONCEPTS FOR STRUCTURAL BIOLOGY | ||
| + | |||
*** [[Cation-pi interactions]] | *** [[Cation-pi interactions]] | ||
*** [[Hydrogen bond]] | *** [[Hydrogen bond]] | ||
| Line 12: | Line 15: | ||
* BIOMOLECULES | * BIOMOLECULES | ||
| + | **[[About_Macromolecular_Structure]] | ||
| + | |||
** NUCLEOTIDES, NUCLEIC ACIDS AND GENETIC INFORMATION | ** NUCLEOTIDES, NUCLEIC ACIDS AND GENETIC INFORMATION | ||
***DNA | ***DNA | ||
| Line 17: | Line 22: | ||
****B-DNA [[1bna]] | ****B-DNA [[1bna]] | ||
**** [[Z-DNA]] | **** [[Z-DNA]] | ||
| + | |||
**AMINO ACIDS | **AMINO ACIDS | ||
*** [[Amino_Acids]] | *** [[Amino_Acids]] | ||
***[[Selenocysteine]] | ***[[Selenocysteine]] | ||
** PROTEINS: PRIMARY STRUCTURE | ** PROTEINS: PRIMARY STRUCTURE | ||
| + | |||
** PROTEINS: THREE-DIMENSIONAL STRUCTURE | ** PROTEINS: THREE-DIMENSIONAL STRUCTURE | ||
*** [[S347/The four tiers of protein structure]] | *** [[S347/The four tiers of protein structure]] | ||
| Line 31: | Line 38: | ||
*** Protein Misfolding | *** Protein Misfolding | ||
****[[Prion_protein]] | ****[[Prion_protein]] | ||
| + | ****[[A_Physical_Model_of_the_Structure_of_GNNQQNY_from_Yeast_Prion_Sup35]] | ||
| + | |||
** COLORED PROTEINS & THOSE THAT CHANGE COLOR | ** COLORED PROTEINS & THOSE THAT CHANGE COLOR | ||
*** [[Green Fluorescent Protein]]; [[GFP_(Hebrew)]] | *** [[Green Fluorescent Protein]]; [[GFP_(Hebrew)]] | ||
*** [[Dronpa]] | *** [[Dronpa]] | ||
*** [[Factor IX]] | *** [[Factor IX]] | ||
| + | |||
** DNA BINDING PROTEINS | ** DNA BINDING PROTEINS | ||
*** [[Helix-turn-helix motif]] | *** [[Helix-turn-helix motif]] | ||
*** [[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1]] | *** [[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1]] | ||
| + | |||
** PROTEIN FUNCTION: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies | ** PROTEIN FUNCTION: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies | ||
*** Antibodies | *** Antibodies | ||
| Line 49: | Line 60: | ||
** LIPIDS AND BIOLOGICAL MEMBRANES | ** LIPIDS AND BIOLOGICAL MEMBRANES | ||
| + | |||
** MEMBRANE TRANSPORT PROTEINS | ** MEMBRANE TRANSPORT PROTEINS | ||
*** [[A Physical Model of the β2-Adrenergic Receptor]] | *** [[A Physical Model of the β2-Adrenergic Receptor]] | ||
| Line 61: | Line 73: | ||
** TOXINS | ** TOXINS | ||
*** [[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]] | *** [[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]] | ||
| + | |||
**MITOSIS, MEOSIS, AND CARGO TRANSPORT PROTEINS | **MITOSIS, MEOSIS, AND CARGO TRANSPORT PROTEINS | ||
***[[Kinesin-5]] | ***[[Kinesin-5]] | ||
| + | |||
** VIRUSES | ** VIRUSES | ||
*** Filamentous bacteriphage | *** Filamentous bacteriphage | ||
| Line 74: | Line 88: | ||
*** Influenza | *** Influenza | ||
**** [[Influenza_hemagglutinin]] | **** [[Influenza_hemagglutinin]] | ||
| + | |||
* ENZYMES | * ENZYMES | ||
** Enzymatic Catalysis | ** Enzymatic Catalysis | ||
| Line 80: | Line 95: | ||
*** Serine Hydrolases | *** Serine Hydrolases | ||
****[[Serine_Protease]] | ****[[Serine_Protease]] | ||
| + | ****[[Trypsin]] | ||
| + | ****[[Alpha-1-antitrypsin]] | ||
**** [[Acetylcholinesterase]] (AChE) | **** [[Acetylcholinesterase]] (AChE) | ||
***** [[Acetylcholine]] | ***** [[Acetylcholine]] | ||
| Line 90: | Line 107: | ||
***Cysteine Proteases | ***Cysteine Proteases | ||
****[[Tobacco_Etch_Virus_(TEV)_Protease]] | ****[[Tobacco_Etch_Virus_(TEV)_Protease]] | ||
| - | ****[[Streptomyces_griseus_Aminopeptidase_(SGAP)]] | + | ****[[Streptomyces_griseus_Aminopeptidase_(SGAP)]]; [[Aminopeptidase]] |
***Acid Proteases | ***Acid Proteases | ||
****[[HIV-1 protease]] | ****[[HIV-1 protease]] | ||
| Line 99: | Line 116: | ||
***Oxidoreductases | ***Oxidoreductases | ||
****[[NADH quinone oxidoreductase ]] | ****[[NADH quinone oxidoreductase ]] | ||
| + | |||
** Enzyme Kinetics, Inhibition, and Control | ** Enzyme Kinetics, Inhibition, and Control | ||
| - | ** | + | |
| + | ** BIOCHEMICAL SIGNALING | ||
***[[Nitric_oxide_synthase]] | ***[[Nitric_oxide_synthase]] | ||
***[[Recoverin,_a_calcium-activated_myristoyl_switch]] | ***[[Recoverin,_a_calcium-activated_myristoyl_switch]] | ||
| + | ***[[Bcl-2]] | ||
| + | ***[[C-Myc]] | ||
* METABOLISM | * METABOLISM | ||
** Introduction to Metabolism | ** Introduction to Metabolism | ||
| + | |||
** Glucose Catabolism | ** Glucose Catabolism | ||
***[[Triose_Phosphate_Isomerase]] | ***[[Triose_Phosphate_Isomerase]] | ||
| Line 111: | Line 133: | ||
*** [[Phosphoglucose_isomerase]] | *** [[Phosphoglucose_isomerase]] | ||
*** [[Calmodulin_in_motion]] | *** [[Calmodulin_in_motion]] | ||
| + | ***[[Biotin_Protein_Ligase]] | ||
| + | |||
** Citric Acid Cycle | ** Citric Acid Cycle | ||
| + | ***[[Aconitase]] | ||
| + | |||
** Electron Transport and Oxidative Phosphorylation | ** Electron Transport and Oxidative Phosphorylation | ||
***[[NADH quinone oxidoreductase ]] | ***[[NADH quinone oxidoreductase ]] | ||
| + | |||
** Photosynthesis | ** Photosynthesis | ||
***[[Photosystem_II]] | ***[[Photosystem_II]] | ||
| Line 119: | Line 146: | ||
***[[PrrA_in_Rhodobacter_sphaeroides]] | ***[[PrrA_in_Rhodobacter_sphaeroides]] | ||
***[[Pyruvate_phosphate_dikinase]] | ***[[Pyruvate_phosphate_dikinase]] | ||
| + | |||
** Lipid Metabolism | ** Lipid Metabolism | ||
| + | ***[[Acid-beta-glucosidase]] | ||
** Amino Acid Metabolism | ** Amino Acid Metabolism | ||
| + | ***[[Aromatic_amino_acid_hydroxylases]] | ||
***[[Phenylalanine_hydroxylase]] | ***[[Phenylalanine_hydroxylase]] | ||
| + | ***[[Tyrosine_hydroxylase]] | ||
| + | ***[[ATP_Phosphoribosyl_Transferase]] | ||
***[[Isochorismate_pyruvate_lyase]] | ***[[Isochorismate_pyruvate_lyase]] | ||
** Mammalian Fuel Metabolism: Integration and Regulation | ** Mammalian Fuel Metabolism: Integration and Regulation | ||
| Line 127: | Line 159: | ||
* GENE EXPRESSION AND REPLICATION | * GENE EXPRESSION AND REPLICATION | ||
** Nucleotide Metabolism | ** Nucleotide Metabolism | ||
| + | |||
** Nucleic Acid Structure | ** Nucleic Acid Structure | ||
***[[Z-DNA]] | ***[[Z-DNA]] | ||
| Line 137: | Line 170: | ||
***[[Structure_of_E._coli_DnaC_helicase_loader]] | ***[[Structure_of_E._coli_DnaC_helicase_loader]] | ||
***[[Rop_protein]] | ***[[Rop_protein]] | ||
| + | |||
** Transcription and RNA Processing | ** Transcription and RNA Processing | ||
| + | ***[[C-Myc]] | ||
***[[Lac_repressor]] | ***[[Lac_repressor]] | ||
***[[TATA-Binding_Protein]] | ***[[TATA-Binding_Protein]] | ||
***[[RSP1275]] | ***[[RSP1275]] | ||
***[[Transcription_Termination_Factor_Rho]] | ***[[Transcription_Termination_Factor_Rho]] | ||
| + | |||
** Protein Synthesis | ** Protein Synthesis | ||
***[[Ribosome]] | ***[[Ribosome]] | ||
| Line 152: | Line 188: | ||
* EVOLUTION | * EVOLUTION | ||
** [[Conservation, Evolutionary]] | ** [[Conservation, Evolutionary]] | ||
| + | |||
** [[Extremophiles]] | ** [[Extremophiles]] | ||
Revision as of 14:29, 11 November 2009
Proteopedia Page Contributors and Editors (what is this?)
Joel L. Sussman, Eran Hodis, Wayne Decatur, Alexander Berchansky, Judy Voet, Alejandro Porto, Helen Ginn, David Canner, Israel Hanukoglu, Karen L. Lee, Arthur Cox, Yuan-Ping Pang, Tilman Schirmer, Eric Martz, Tomas Klumpler, Karl Oberholser, Angel Herraez, Jaime Prilusky
