User:Claire Roudot/Sandbox 1
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HET-s (218-289) is formed by four <scene name='User:Claire_Roudot/Sandbox_1/4b_sheets/1'>β strands</scene>,each strand is formed by two parallel <scene name='User:Claire_Roudot/Sandbox_1/Beta4a-beta2a/1'> β sheets </scene> with short HN-Hα contacts (3,0A). <scene name='User:Claire_Roudot/Sandbox_1/Core/1'>Three strands</scene> constitute the core of the fibril. The <scene name='User:Claire_Roudot/Sandbox_1/Exit/1'>last strand</scene> is outside the core and is formed by β2b and β4b. | HET-s (218-289) is formed by four <scene name='User:Claire_Roudot/Sandbox_1/4b_sheets/1'>β strands</scene>,each strand is formed by two parallel <scene name='User:Claire_Roudot/Sandbox_1/Beta4a-beta2a/1'> β sheets </scene> with short HN-Hα contacts (3,0A). <scene name='User:Claire_Roudot/Sandbox_1/Core/1'>Three strands</scene> constitute the core of the fibril. The <scene name='User:Claire_Roudot/Sandbox_1/Exit/1'>last strand</scene> is outside the core and is formed by β2b and β4b. | ||
| - | The segments <scene name='User:Claire_Roudot/Sandbox_1/3/1'>β1a and β1b</scene>(<scene name='User:Claire_Roudot/Sandbox_1/2/1'>β3a and β3b</scene>) have an approximately rectangular kink between them thanks a connection by a two-residue β arc, changing the inside-outside pattern of side chains. The connection between β1b and β2a (and similarly, between β3b and β4a) is linked by a three-residue β arc, allowing for the orientation change of the polypeptide backbone by ~ 150°. The β-sheet pattern is disrupted between β2a and β2b, leading to ~90° arcs. β1-β2 and β3-β4 are pseudo repeats and linked by parallel intramolecular and intermolecular H bonds, as follows: β1a-β3a, β1b-β3b, β2a-β4a, β2b-β4b. | + | The segments <scene name='User:Claire_Roudot/Sandbox_1/3/1'>β1a and β1b</scene> (<scene name='User:Claire_Roudot/Sandbox_1/2/1'>β3a and β3b</scene>) have an approximately rectangular kink between them thanks a connection by a two-residue β arc, changing the inside-outside pattern of side chains. The connection between <scene name='User:Claire_Roudot/Sandbox_1/4/2'>β1b and β2a</scene> (and similarly, between <scene name='User:Claire_Roudot/Sandbox_1/3/2'>β3b and β4a</scene>) is linked by a three-residue β arc, allowing for the orientation change of the polypeptide backbone by ~ 150°. The β-sheet pattern is disrupted between <scene name='User:Claire_Roudot/Sandbox_1/6/1'>β2a and β2b</scene>, leading to ~90° arcs. β1-β2 and β3-β4 are pseudo repeats and linked by parallel intramolecular and intermolecular H bonds, as follows: β1a-β3a, β1b-β3b, β2a-β4a, β2b-β4b. |
Revision as of 19:37, 12 November 2009
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Amyloid Fibrils of the HET-s(218-289) Prion Form
The HET- protein from the filamentous fungus Podospora Anserina has a prion forming domain from residues 218 to 289.
Prions are often implicated in disease such as Creutzeld Jakob disease in humans, it can be also found in yeast and filamentous fungi.
Prions are proteins Prp-sc which have a different domain conformation than the natural protein Prp-c.
The prion form of HET-s plays a role in heterokaryon incompatibility, a fungal self/nonself recognition phenomenon that prevents different form of parasitism.
Structure
The global organization of the HET-s (218-289) fibril is a left handed β solenoid with two windings per molecule. The studies of this part of molecule have been done with NMR.
HET-s (218-289) is formed by four ,each strand is formed by two parallel with short HN-Hα contacts (3,0A). constitute the core of the fibril. The is outside the core and is formed by β2b and β4b.
The segments () have an approximately rectangular kink between them thanks a connection by a two-residue β arc, changing the inside-outside pattern of side chains. The connection between (and similarly, between ) is linked by a three-residue β arc, allowing for the orientation change of the polypeptide backbone by ~ 150°. The β-sheet pattern is disrupted between , leading to ~90° arcs. β1-β2 and β3-β4 are pseudo repeats and linked by parallel intramolecular and intermolecular H bonds, as follows: β1a-β3a, β1b-β3b, β2a-β4a, β2b-β4b.
The first three β strands of each pseudo-repeat realized a triangular hydrophobic core, which is tightly packed, where almost exclusively hydrophobic residues are contained (Ala, Leu, Ile and Val). These strands created a very dense packing where water is quite exclude. In contrast, all face outside and are mostly located in arc β-arc regions, where the solvent accessibility is high. Three of them are arranged on top of each other such that charges are compensated and the formation of salt-bridges becomes possible. Because the stacking is parallel, it may have intra- and intermolecular charge compensation This may explain why fibrils have high stability against denaturation by non-ionic urea at neutral pH, but are destabilized by urea at acidic or basic pH.
The structure of HET-s(218-289) with its overall β-helical fold is more complexed than that of peptide fibril- this complexity is often is soluble proteins. This complex alternance of pseudo-repeat (β1/β3 and β2/β4) permits the alternation of positive and negative charges along the fibril axis, and also having a molecule forming two turns of the solenoid.
The triangular hydrophobic core formed by three stands has some resemblance with β-solenoid structures of soluble proteins like filamentous hemagglutinin protein. In this case, the periodicity does not exist but he triangular core is quite similar. A β-solenoid fold has also been proposed for the prion state of human prion protein Prp (…..).
Consequences of the structure on the amyloid fibril
This well-organized structure of the HET-s prion fibrils is originally from the high order is these fibrils as well as the absence of polymorphism caused by different underlying molecular at physiological pH conditions. Indeed interaction between charges in the fibril gives a high stability, so polymorphism is excluding. The fibril structure of HET-s (218-289) along an axe amplified the well-defined structure of a functional amyloid.
References
Wasmer C, Lange A, Van Melckebeke H, Siemer AB, Riek R, Meier BH. Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core. Science. 2008 Mar 14;319(5869):1523-6[1]. PMID:18339938
