1ub3

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Revision as of 01:33, 25 November 2007

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spinqualitylabelsall models 1ub3, resolution 1.40Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

Crystal Structure of Tetrameric Structure of Aldolase from thermus thermophilus HB8

Overview

2-Deoxyribose-5-phosphate aldolase catalyzes a reversible aldol, condensation of two aldehydes via formation of a covalent Schiff-base, intermediate at the active lysine residue. The crystal structure of, 2-deoxyribose-5-phosphate aldolase from Thermus thermophilus HB8 has been, determined with and without the substrate at atomic resolution. This, enzyme, which has a unique homotetramer structure, has been compared with, the previously reported crystal structures of two orthologues from, Escherichia coli and Aeropyrum pernix. In contrast to the similar, alpha/beta-barrel fold of the monomers, substantial quaternary structural, differences are observed between these three enzymes. Further comparison, of the subunit-subunit interface areas of these aldolases showed a clear, positive correlation between the interface area and the living temperature, of the source organism. From these results, it is concluded that the, oligomeric state of 2-deoxyribose-5-phosphate aldolase is important for, the thermostability and not for the catalytic function.

About this Structure

1UB3 is a Single protein structure of sequence from Thermus thermophilus with HPD as ligand. Active as Deoxyribose-phosphate aldolase, with EC number 4.1.2.4 Full crystallographic information is available from OCA.

Reference

Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability., Lokanath NK, Shiromizu I, Ohshima N, Nodake Y, Sugahara M, Yokoyama S, Kuramitsu S, Miyano M, Kunishima N, Acta Crystallogr D Biol Crystallogr. 2004 Oct;60(Pt 10):1816-23. Epub 2004, Sep 23. PMID:15388928

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