Proteopedia:Table of Contents

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{{#tree:id=siteTree|openlevels=1|root='''Chemistry of Life'''|close=top|open=top|
{{#tree:id=siteTree|openlevels=1|root='''Chemistry of Life'''|close=top|open=top|
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* INTRODUCTION
+
* Introduction
** Introduction to the Chemistry of Life
** Introduction to the Chemistry of Life
-
** WATER
+
** Water
*** [[Water_in_macromolecular_models|Water in Macromolecular Models]]
*** [[Water_in_macromolecular_models|Water in Macromolecular Models]]
-
** KEY CHEMICAL CONCEPTS FOR STRUCTURAL BIOLOGY
+
** Key Chemical Concepts for Structural Biology
*** [[Amino_Acids]]
*** [[Amino_Acids]]
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*** [[Isoelectric_point]]
*** [[Isoelectric_point]]
-
* BIOMOLECULES
+
* Biomolecules
**[[About_Macromolecular_Structure]]
**[[About_Macromolecular_Structure]]
-
** NUCLEOTIDES, NUCLEIC ACIDS AND GENETIC INFORMATION
+
** Nucleotides, Nucleic Acids and Genetic Information
*** DNA
*** DNA
**** [[DNA]]
**** [[DNA]]
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**** [[Z-DNA]]
**** [[Z-DNA]]
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** AMINO ACIDS
+
** Amino Acids
*** [[Amino_Acids]]
*** [[Amino_Acids]]
*** [[Selenocysteine]]
*** [[Selenocysteine]]
-
** PROTEINS: PRIMARY STRUCTURE
+
** Proteins, Primary Structure
*** [[Conservation,_Evolutionary]]
*** [[Conservation,_Evolutionary]]
*** [[Isoelectric_point]]
*** [[Isoelectric_point]]
-
** PROTEINS: THREE-DIMENSIONAL STRUCTURE
+
** Proteins, Three-Dimensional Structure
*** [[S347/The four tiers of protein structure]]
*** [[S347/The four tiers of protein structure]]
*** [[Secondary_structure]]
*** [[Secondary_structure]]
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**** [[A_Physical_Model_of_the_Structure_of_GNNQQNY_from_Yeast_Prion_Sup35]]
**** [[A_Physical_Model_of_the_Structure_of_GNNQQNY_from_Yeast_Prion_Sup35]]
-
** COLORED PROTEINS & THOSE THAT CHANGE COLOR
+
** Colored Proteins & those that Change Color
*** [[Green Fluorescent Protein]]; [[GFP_(Hebrew)]]
*** [[Green Fluorescent Protein]]; [[GFP_(Hebrew)]]
*** [[Dronpa]]
*** [[Dronpa]]
*** [[Factor IX]]
*** [[Factor IX]]
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** DNA BINDING PROTEINS
+
** DNA Binding Proteins
*** [[Helix-turn-helix motif]]
*** [[Helix-turn-helix motif]]
*** [[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1]]
*** [[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1]]
-
** PROTEIN FUNCTION: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
+
** Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
*** Antibodies
*** Antibodies
**** [[IgA]]
**** [[IgA]]
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*** [[Kinesin-5]]
*** [[Kinesin-5]]
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** LIPIDS AND BIOLOGICAL MEMBRANES
+
** Lipids and Biological Membranes
-
** MEMBRANE TRANSPORT PROTEINS
+
** Membrane Transport Proteins
*** [[A Physical Model of the β2-Adrenergic Receptor]]
*** [[A Physical Model of the β2-Adrenergic Receptor]]
*** [[Lactose_Permease]]
*** [[Lactose_Permease]]
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***[[Enzyme_I_of_the_Phosphoenolpyruvate:Sugar_Phosphotransferase_System]]
***[[Enzyme_I_of_the_Phosphoenolpyruvate:Sugar_Phosphotransferase_System]]
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** PRIONS AND INTRINSICALLY DISORDERED PROTEINS
+
** Prions and Intrinsically Disordered Proteins
*** [[Prion_protein]]
*** [[Prion_protein]]
*** [[Doppel]]
*** [[Doppel]]
*** [[Intrinsically Disordered Protein]]
*** [[Intrinsically Disordered Protein]]
-
** TOXINS
+
** Toxins
*** [[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
*** [[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
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** MITOSIS, MEOSIS, AND CARGO TRANSPORT PROTEINS
+
** Mitosis, Meiosis and Cargo Transport Proteins
*** [[Kinesin-5]]
*** [[Kinesin-5]]
-
** VIRUSES
+
** Viruses
*** [[User:Wayne_Decatur/Suppression_of_RNA_Silencing_by_Viruses]]
*** [[User:Wayne_Decatur/Suppression_of_RNA_Silencing_by_Viruses]]
*** Filamentous bacteriphage
*** Filamentous bacteriphage
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**** [[Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza]]
**** [[Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza]]
-
* ENZYMES
+
* Enzymes
** Enzymatic Catalysis
** Enzymatic Catalysis
***[[Hen_Egg-White_%28HEW%29_Lysozyme]]
***[[Hen_Egg-White_%28HEW%29_Lysozyme]]
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***[[Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza]]
***[[Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza]]
-
** BIOCHEMICAL SIGNALING
+
** Biochemical Signaling
*** [[Nitric_oxide_synthase]]
*** [[Nitric_oxide_synthase]]
*** [[Recoverin,_a_calcium-activated_myristoyl_switch]]
*** [[Recoverin,_a_calcium-activated_myristoyl_switch]]
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*** [[C-Myc]]
*** [[C-Myc]]
-
* METABOLISM
+
* Metabolism
** Introduction to Metabolism
** Introduction to Metabolism
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*** [[Dihydrofolate_reductase]]
*** [[Dihydrofolate_reductase]]
-
* GENE EXPRESSION AND REPLICATION
+
* Gene Expression and Replication
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*** [[Tangible_Models_of_Cdc42_Interacting_With_Intersectin]]
*** [[Tangible_Models_of_Cdc42_Interacting_With_Intersectin]]
-
* EVOLUTION
+
* Evolution
** [[Conservation, Evolutionary]]
** [[Conservation, Evolutionary]]
** [[Extremophiles]]
** [[Extremophiles]]
-
* IMMUNE SYSTEM
+
* Immune System
** Antibodies
** Antibodies
*** [[IgA]]
*** [[IgA]]
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-
* METHODS OF STRUCTURE DETERMINATION
+
* Methods of Structure Determination
** X-ray
** X-ray
*** [[X-ray_crystallography]]
*** [[X-ray_crystallography]]
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** Electron Microscopy
** Electron Microscopy
-
* METHODS OF STRUCTURE & SEQUENCE ANALYSIS
+
* Methods of Structure & Sequence Analysis
-
** STRUCTURAL ANALYSIS & VISUALIZATION
+
** Structural Analysis & Visualization
*** [[Chime]]
*** [[Chime]]
*** Jmol
*** Jmol
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*** [[DRuMS]] - set of standard color schemes for macromolecular visualization
*** [[DRuMS]] - set of standard color schemes for macromolecular visualization
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** SEQUENCE ANALYSIS
+
** Sequence Analysis
*** [[User:Wayne Decatur/Sequence analysis tools|Sequence Analysis Tools]]
*** [[User:Wayne Decatur/Sequence analysis tools|Sequence Analysis Tools]]
}}
}}

Revision as of 12:14, 12 December 2009

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