Template:STRUCTURE 3gpd

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Revision as of 06:37, 21 January 2010

3gpd, resolution 3.50Å ()

Sites:

, , , , , , , , , , , , and

Ligands:

Activity:

Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating), with EC number 1.2.1.12

Structural annotation:
Resources:	CATH : 3Gpdg02, 3Gpdg01, 3Gpdr01, 3Gpdr02 InterPro : Ipr000173, Ipr006424 Pfam : PF00044, PF02800 SCOP : d3gpdg1, d3gpdg2, d3gpdr1, d3gpdr2 UniProt : P04406

Functional annotation:
Resources:	GeneCard : GAPDH
Cellular component:	cytoplasm
Biological process:	glycolysis glucose metabolic process
Molecular function:	glyceraldehyde-3-phosphate dehydrogenase activity oxidoreductase activity protein binding glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity NAD binding

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

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OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_3gpd"

@@ Line 1: / Line 1: @@
 {{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[3gpd]], resolution 3.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[3gpd]], [[Resolution|resolution]] 3.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+|SITE= <scene name='pdbsite=ABR:Residues+Interacting+w.+The+Adenine+Base+Of+Nad+Cofactor+...'>ABR</scene>, <scene name='pdbsite=AC1:Binding+Site+For+Residue+So4+R+338'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+So4+R+340'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+So4+G+338'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+So4+G+340'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Nad+R+336'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Nad+G+336'>AC6</scene>, <scene name='pdbsite=APR:Residues+Interacting+w.+The+Phosphate+Of+A+Nucleotide+Of+...'>APR</scene>, <scene name='pdbsite=ARR:Residues+Interacting+w.+The+A+Ribose+Of+Nad+Cofactor+In+...'>ARR</scene>, <scene name='pdbsite=IPR:Residues+Interacting+w.+The+Substrate+And+The+Inorganic+...'>IPR</scene>, <scene name='pdbsite=NBR:Residues+Interacting+w.+The+Nicotinamide+Base+Of+Nad+Cof+...'>NBR</scene>, <scene name='pdbsite=NPR:Residues+Interacting+w.+The+Phosphate+Of+Nicotinamide+Nu+...'>NPR</scene>, <scene name='pdbsite=NRR:Residues+Interacting+w.+The+Ribose+Of+Nicotinamide+Nucle+...'>NRR</scene> and <scene name='pdbsite=SPR:Residues+Interacting+w.+The+Substrate+And+The+Inorganic+...'>SPR</scene>
 |LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glyceraldehyde-3-phosphate_dehydrogenase_(phosphorylating) Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.12 1.2.1.12] </span>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00044 Gp_dh_N], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02800 Gp_dh_C], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0057 GapA]</span>
 |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gpd OCA], [http://www.ebi.ac.uk/pdbsum/3gpd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3gpd RCSB]</span>
 |FUNCTION={{GO|id=GO:0008943 | text = glyceraldehyde-3-phosphate dehydrogenase activity}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0004365 | text = glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity}}{{GO|id=GO:0051287 | text = NAD binding}}
@@ Line 10: / Line 10: @@
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdG02 3Gpdg02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdG01 3Gpdg01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdR01 3Gpdr01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdR02 3Gpdr02]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000173 Ipr000173], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006424 Ipr006424]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00044 PF00044], [http://pfam.sanger.ac.uk/family?acc=PF02800 PF02800]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30029 d3gpdg1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=39944 d3gpdg2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30028 d3gpdr1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=39943 d3gpdr2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P04406 P04406]</span>
 |FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=GAPDH GAPDH]</span>
-|CONSURF={{!}}-
+|uPDB=3GPD|CONSURF={{!}}-
 {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"

Template:STRUCTURE 3gpd

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Revision as of 06:37, 21 January 2010

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