Proteopedia:Supplementary materials
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Some journals have ''interactive figures'' in [[Jmol]] incorporated into online articles. These include ''Biochemical Journal'' and ''ACS Chemical Biology''. Examples may be found at [http://moleculesinmotion.com MoleculesInMotion.Com]. | Some journals have ''interactive figures'' in [[Jmol]] incorporated into online articles. These include ''Biochemical Journal'' and ''ACS Chemical Biology''. Examples may be found at [http://moleculesinmotion.com MoleculesInMotion.Com]. | ||
| - | The [http://iucr.org International Union of Crystallography] has provided a [http://journals.iucr.org/services/help/jtkt/index.html Toolkit for Jmol-Enhanced Figures]. | + | The [http://iucr.org International Union of Crystallography] has provided a [http://journals.iucr.org/services/help/jtkt/index.html Toolkit for Jmol-Enhanced Figures]. [http://www.mail-archive.com/jmol-users@lists.sourceforge.net/msg13193.html Announced] in November, 2009, it was developed by Brian McMahon, Bob Hanson, and several students, and is described in [http://scripts.iucr.org/cgi-bin/paper?S0021889808015616 this article] in the ''Journal of Applied Crystallogaphy''. |
Other uses of Jmol in journals will be found at | Other uses of Jmol in journals will be found at | ||
[http://wiki.jmol.org/index.php/Journals_Using_Jmol Journals Using Jmol] (in the wiki at [http://Jmol.Org Jmol.Org]). | [http://wiki.jmol.org/index.php/Journals_Using_Jmol Journals Using Jmol] (in the wiki at [http://Jmol.Org Jmol.Org]). | ||
Revision as of 10:21, 6 February 2010
Articles in Proteopedia can be supplementary materials for publications in scientific journals. Such articles can enable readers to rotate molecular scenes with the same initial orientation, color schemes, and labeling as figures in the publication. Links to the supplementary materials in Proteopedia can be placed in the text of the publication, and/or in the .doc file included on the journal website as supplementary materials. The Proteopedia article can be developed in advance of publication, yet hidden from viewing by visitors to Proteopedia until publication occurs (see Proteopedia:Workbench).
Examples
Methods
External Resources
Some journals have interactive figures in Jmol incorporated into online articles. These include Biochemical Journal and ACS Chemical Biology. Examples may be found at MoleculesInMotion.Com.
The International Union of Crystallography has provided a Toolkit for Jmol-Enhanced Figures. Announced in November, 2009, it was developed by Brian McMahon, Bob Hanson, and several students, and is described in this article in the Journal of Applied Crystallogaphy.
Other uses of Jmol in journals will be found at Journals Using Jmol (in the wiki at Jmol.Org).
