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1gyk
From Proteopedia
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| - | [[Image:1gyk.gif|left|200px]]<br /> | + | [[Image:1gyk.gif|left|200px]]<br /><applet load="1gyk" size="450" color="white" frame="true" align="right" spinBox="true" |
| - | <applet load="1gyk" size="450" color="white" frame="true" align="right" spinBox="true" | + | |
caption="1gyk, resolution 2.2Å" /> | caption="1gyk, resolution 2.2Å" /> | ||
'''SERUM AMYLOID P COMPONENT CO-CRYSTALLISED WITH MOBDG AT NEUTRAL PH'''<br /> | '''SERUM AMYLOID P COMPONENT CO-CRYSTALLISED WITH MOBDG AT NEUTRAL PH'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1GYK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CA and CDG as [http://en.wikipedia.org/wiki/ligands ligands]. | + | 1GYK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CA and CDG as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Site: <scene name='pdbsite=CA1:Ca Binding Site For Chain E'>CA1</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1GYK OCA]. |
==Reference== | ==Reference== | ||
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[[Category: polymorphism]] | [[Category: polymorphism]] | ||
| - | ''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 15:45:35 2007'' |
Revision as of 13:35, 18 December 2007
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SERUM AMYLOID P COMPONENT CO-CRYSTALLISED WITH MOBDG AT NEUTRAL PH
Contents |
Overview
Two monoclinic (P2(1)) crystal forms of human serum amyloid P component, (SAP) in complex with the 4,6-pyruvate acetal of beta-D-galactose, (MObetaDG) were prepared. Structure analysis by molecular replacement and, refinement at 2.2A resolution revealed that crystal form 1 (a=95.76A, b=70.53A, c=103.41A, beta=96.80 degrees) contained a pentamer in the, asymmetric unit with a structure very similar to that of the published, search model. The mode of ligand co-ordination was also similar except, that four of the five subunits showed bound ligand with an additional, H-bond between O1 of the galactose and the side-chain of Lys79. One, sub-unit showed no bound ligand and a vacant calcium site close to a, crystal contact. The 2.6A resolution structure of crystal form 2, (a=118.60A, b=109.10A, c=120.80A and beta=95.16 degrees ) showed ten, sub-units in the asymmetric unit, all with two bound calcium ions and, ligand. The most extensive protein-protein interactions between pentamers, describe an AB face-to-face interaction involving 15 ion pairs that, sandwiches five molecules of bound MObetaDG at the interface.
Disease
Known disease associated with this structure: Amyloidosis, secondary, susceptibility to OMIM:[104770]
About this Structure
1GYK is a Single protein structure of sequence from Homo sapiens with CA and CDG as ligands. Known structural/functional Site: . Full crystallographic information is available from OCA.
Reference
The structures of crystalline complexes of human serum amyloid P component with its carbohydrate ligand, the cyclic pyruvate acetal of galactose., Thompson D, Pepys MB, Tickle I, Wood S, J Mol Biol. 2002 Jul 26;320(5):1081-6. PMID:12126626
Page seeded by OCA on Tue Dec 18 15:45:35 2007
Categories: Homo sapiens | Single protein | Pepys, M.B. | Thompson, D. | Tickle, I. | Wood, S.P. | CA | CDG | Amyloid lectin | Glycoprotein | Pentraxin | Plasma | Polymorphism
