Sandbox Prolyl Hydroxylase Domain (PHD) Enzyme
From Proteopedia
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One of the [[CBI Molecules]] being studied in the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program] at UMass Amherst and on display at the [http://www.molecularplayground.org/ Molecular Playground]. | One of the [[CBI Molecules]] being studied in the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program] at UMass Amherst and on display at the [http://www.molecularplayground.org/ Molecular Playground]. | ||
| - | Metazoans adapt to oxygen levels in the environment by making use of | + | Metazoans adapt to oxygen levels in the environment by making use of intracellular oxygen levels as signals to regulate the [[transcription]] of genes essential under normoxic or [http://en.wikipedia.org/wiki/Hypoxia_(medical) hypoxic] conditions. Central to this mechanism is the oxygen-dependent hydroxylation on specific proline and asparagine residues of hypoxia-inducible factor [http://en.wikipedia.org/wiki/HIF1A (HIF)-alpha].<ref name="pmid18259202">{{cite journal | author = Fong GH, Takeda K | title = Role and Regulation of Prolyl Hydroxylase Domain Proteins | journal = Cell Death and Differentiation | volume = 15 | issue = | pages = 635–641 | year = 2008 | month = February | pmid = 18259202 | doi = 10.1038/cdd.2008.10 | url = | issn = }}</ref> |
| - | '''Prolyl hydroxylase domain (PHD) enzyme''' [http://www.chem.qmul.ac.uk/iubmb/enzyme/EC1/14/11/ (EC 1.14.11.-)] is a Fe(II)/2-oxoglutarate-dependent dioxygenase that catalyzes the ''trans''-4-hydroxylation of the specific proline residues (either Pro-402 or Pro-564) in the transcription factor, [http://en.wikipedia.org/wiki/HIF1A (HIF)-alpha]. | + | '''Prolyl hydroxylase domain (PHD) enzyme''' [http://www.chem.qmul.ac.uk/iubmb/enzyme/EC1/14/11/ (EC 1.14.11.-)] is a Fe(II)/2-oxoglutarate-dependent [http://en.wikipedia.org/wiki/Oxygenase dioxygenase] that catalyzes the ''trans''-4-hydroxylation of the specific proline residues (either Pro-402 or Pro-564) in the transcription factor, [http://en.wikipedia.org/wiki/HIF1A (HIF)-alpha]. |
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| + | In mammals, this dioxygenase subfamily originally includes three homolog members but was recently updated: PHD1 (also known as HPH3 and [[EGLN2]]), PHD2 (also known as HPH2 and [[EGLN1]]), PHD3 (also known as HPH1 and [[EGLN3]]), and a newly identified enzyme called P4H-TM (also named as PHD4 and EGLN4).<ref name="pmid18259202">{{cite journal | author = Fong GH, Takeda K | title = Role and Regulation of Prolyl Hydroxylase Domain Proteins | journal = Cell Death and Differentiation | volume = 15 | issue = | pages = 635–641 | year = 2008 | month = February | pmid = 18259202 | doi = 10.1038/cdd.2008.10 | url = | issn = }} | ||
Revision as of 19:14, 30 April 2010
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| 2g19, resolution 1.70Å () | |||||||||
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| Ligands: | , | ||||||||
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| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
One of the CBI Molecules being studied in the University of Massachusetts Amherst Chemistry-Biology Interface Program at UMass Amherst and on display at the Molecular Playground.
Metazoans adapt to oxygen levels in the environment by making use of intracellular oxygen levels as signals to regulate the transcription of genes essential under normoxic or hypoxic conditions. Central to this mechanism is the oxygen-dependent hydroxylation on specific proline and asparagine residues of hypoxia-inducible factor (HIF)-alpha.[1]
Prolyl hydroxylase domain (PHD) enzyme (EC 1.14.11.-) is a Fe(II)/2-oxoglutarate-dependent dioxygenase that catalyzes the trans-4-hydroxylation of the specific proline residues (either Pro-402 or Pro-564) in the transcription factor, (HIF)-alpha.
In mammals, this dioxygenase subfamily originally includes three homolog members but was recently updated: PHD1 (also known as HPH3 and EGLN2), PHD2 (also known as HPH2 and EGLN1), PHD3 (also known as HPH1 and EGLN3), and a newly identified enzyme called P4H-TM (also named as PHD4 and EGLN4).[1]
