This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 2x0n
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
{{Structure | {{Structure | ||
| - | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2x0n]], resolution 3.20Å (<scene name='initialview01'>default scene</scene>)}}} | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2x0n]], [[Resolution|resolution]] 3.20Å (<scene name='initialview01'>default scene</scene>)}}} |
|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+So4+A+359'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+So4+A+360'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Nad+A+361'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+So4+B+359'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+So4+B+360'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Nad+B+361'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+So4+O+359'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+So4+O+360'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Nad+O+361'>AC9</scene>, <scene name='pdbsite=BC1:Binding+Site+For+Residue+So4+P+359'>BC1</scene>, <scene name='pdbsite=BC2:Binding+Site+For+Residue+So4+P+360'>BC2</scene>, <scene name='pdbsite=BC3:Binding+Site+For+Residue+Nad+P+361'>BC3</scene>, <scene name='pdbsite=BC4:Binding+Site+For+Residue+So4+Q+359'>BC4</scene>, <scene name='pdbsite=BC5:Binding+Site+For+Residue+So4+Q+360'>BC5</scene>, <scene name='pdbsite=BC6:Binding+Site+For+Residue+Nad+Q+361'>BC6</scene>, <scene name='pdbsite=BC7:Binding+Site+For+Residue+So4+R+359'>BC7</scene>, <scene name='pdbsite=BC8:Binding+Site+For+Residue+So4+R+360'>BC8</scene> and <scene name='pdbsite=BC9:Binding+Site+For+Residue+Nad+R+361'>BC9</scene> | |SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+So4+A+359'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+So4+A+360'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Nad+A+361'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+So4+B+359'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+So4+B+360'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Nad+B+361'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+So4+O+359'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+So4+O+360'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Nad+O+361'>AC9</scene>, <scene name='pdbsite=BC1:Binding+Site+For+Residue+So4+P+359'>BC1</scene>, <scene name='pdbsite=BC2:Binding+Site+For+Residue+So4+P+360'>BC2</scene>, <scene name='pdbsite=BC3:Binding+Site+For+Residue+Nad+P+361'>BC3</scene>, <scene name='pdbsite=BC4:Binding+Site+For+Residue+So4+Q+359'>BC4</scene>, <scene name='pdbsite=BC5:Binding+Site+For+Residue+So4+Q+360'>BC5</scene>, <scene name='pdbsite=BC6:Binding+Site+For+Residue+Nad+Q+361'>BC6</scene>, <scene name='pdbsite=BC7:Binding+Site+For+Residue+So4+R+359'>BC7</scene>, <scene name='pdbsite=BC8:Binding+Site+For+Residue+So4+R+360'>BC8</scene> and <scene name='pdbsite=BC9:Binding+Site+For+Residue+Nad+R+361'>BC9</scene> | ||
|LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | |LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | ||
| Line 6: | Line 6: | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x0n OCA], [http://www.ebi.ac.uk/pdbsum/2x0n PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2x0n RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x0n OCA], [http://www.ebi.ac.uk/pdbsum/2x0n PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2x0n RCSB]</span> | ||
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020829 Ipr020829], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020830 Ipr020830], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020831 Ipr020831], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020832 Ipr020832], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000173 Ipr000173], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006424 Ipr006424], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR016040 Ipr016040], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020828 Ipr020828]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00044 PF00044], [http://pfam.sanger.ac.uk/family?acc=PF02800 PF02800]</span> | |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020829 Ipr020829], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020830 Ipr020830], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020831 Ipr020831], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020832 Ipr020832], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000173 Ipr000173], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006424 Ipr006424], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR016040 Ipr016040], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR020828 Ipr020828]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00044 PF00044], [http://pfam.sanger.ac.uk/family?acc=PF02800 PF02800]</span> | ||
| + | |uPDB=2X0N|CONSURF={{!}}- | ||
| + | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
| + | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| + | {{!}} '''Toggle Conservation Colors:''' | ||
| + | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| + | Rows = identical sequences: | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>A [x]</text> | ||
| + | <name>jmb_2x0n_A</name> | ||
| + | <title>toggle chain A</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>B [x]</text> | ||
| + | <name>jmb_2x0n_B</name> | ||
| + | <title>toggle chain B</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>O [x]</text> | ||
| + | <name>jmb_2x0n_O</name> | ||
| + | <title>toggle chain O</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>P [x]</text> | ||
| + | <name>jmb_2x0n_P</name> | ||
| + | <title>toggle chain P</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>Q [x]</text> | ||
| + | <name>jmb_2x0n_Q</name> | ||
| + | <title>toggle chain Q</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolButton> | ||
| + | <script></script> | ||
| + | <text>R [x]</text> | ||
| + | <name>jmb_2x0n_R</name> | ||
| + | <title>toggle chain R</title> | ||
| + | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| + | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| + | </jmolButton> | ||
| + | </jmol> | ||
| + | |||
}} | }} | ||
Current revision
| |||||||||
| 2x0n, resolution 3.20Å () | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Sites: | , , , , , , , , , , , , , , , , and | ||||||||
| Ligands: | , | ||||||||
| Activity: | Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating), with EC number 1.2.1.12 | ||||||||
| |||||||||
| |||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
