Alignment of 1rpu vs 1r9f
From Proteopedia
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| - | + | Sequences in structures obtained from PDBsum and aligned.<br> | |
| + | Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br> | ||
Length=121<br> | Length=121<br> | ||
Score = 226 bits (576) | Score = 226 bits (576) | ||
Revision as of 02:14, 16 May 2010
Sequences in structures obtained from PDBsum and aligned.
Alignment from: protein-protein BLAST
Length=121
Score = 226 bits (576)
Expect = 1e-64
Method: Compositional matrix adjust.
Identities = 106/119 (89%)
Positives = 114/119 (95%)
Gaps = 3/119 (2%)
1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61
1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1rpf 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120
