Alignment of 1rpu vs 1r9f

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m (added what 1rpu and 1r9f were)
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1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br>
1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br>
-
1rpf 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br>
+
1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br>
</font></b></small><br>
</font></b></small><br>
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 +
[[1rpu]] = Carnation italian ringspot virus p19<br>
 +
[[1r9f]] = Tomato bushy stunt virus p19

Revision as of 02:40, 16 May 2010

Sequences in structures obtained from PDBsum and aligned.
Alignment from: protein-protein BLAST
Length=121
Score = 226 bits (576) Expect = 1e-64 Method: Compositional matrix adjust.
Identities = 106/119 (89%) Positives = 114/119 (95%) Gaps = 3/119 (2%)


1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
        +TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61

1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
        SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120

1rpu = Carnation italian ringspot virus p19
1r9f = Tomato bushy stunt virus p19

Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur

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