Alignment of 1rpu vs 1r9f

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Current revision (02:43, 16 May 2010) (edit) (undo)
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1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br>
1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br>
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&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+TSPFKLPDESPSWTEWRL+NDE;&nbsp;&nbsp;&nbsp;NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>
+
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+TSPFKLPDESPSWTEWRL+NDE&nbsp;&nbsp;&nbsp;NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>
1r9f 2&nbsp; MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br>
1r9f 2&nbsp; MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br>

Current revision

1rpu = Carnation italian ringspot virus p19
1r9f = Tomato bushy stunt virus p19

Sequences in structures obtained from PDBsum and aligned.
Alignment from: protein-protein BLAST
Length=121
Score = 226 bits (576) Expect = 1e-64 Method: Compositional matrix adjust.
Identities = 106/119 (89%) Positives = 114/119 (95%) Gaps = 3/119 (2%)


1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
        +TSPFKLPDESPSWTEWRL+NDE   NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61

1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
        SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120

Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur

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