2iv2

From Proteopedia

Revision as of 17:26, 18 December 2007

REINTERPRETATION OF REDUCED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI

Overview

Re-evaluation of the crystallographic data of the molybdenum-containing E., coli formate dehydrogenase H (Boyington et al. Science 275:1305-1308, 1997), reported in two redox states, reveals important structural, differences for the formate-reduced form, with large implications for the, reaction mechanism proposed in that work. We have re-refined the reduced, structure with revised protocols and found substantial rearrangement in, some parts of it. The original model is essentially correct but an, important loop close to the molybdenum active site was mistraced, and, therefore, catalytic relevant residues were located in wrong positions. In, particular selenocysteine-140, a ligand of molybdenum in the original, work, and essential for catalysis, is no longer bound to the metal after, reduction of the enzyme with formate. These results are incompatible with, the originally proposed reaction mechanism. On the basis of our new, interpretation, we have revised and proposed a new reaction mechanism, which reconciles the new X-ray model with previous biochemical and, extended X-ray absorption fine structure data.

About this Structure

2IV2 is a Single protein structure of sequence from [1] with SF4, 2MD, MGD, MO and S as ligands. Active as Formate dehydrogenase, with EC number 1.2.1.2 Known structural/functional Site: . Full crystallographic information is available from OCA.

Reference

Formate-reduced E. coli formate dehydrogenase H: The reinterpretation of the crystal structure suggests a new reaction mechanism., Raaijmakers HC, Romao MJ, J Biol Inorg Chem. 2006 Oct;11(7):849-54. Epub 2006 Jul 8. PMID:16830149

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