Ribosomal protein S17

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(New page: Crystal Structure of Ribosomal protein S17 from 2zm6, chain O {{STRUCTURE_2zm6| PDB=2zm6 | SIZE=300| SCENE= |right|CAPTION=Ribosomal protein S17 ...)
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[[Image:RPS17.png|left|200px|thumb|Crystal Structure of Ribosomal protein S17 from [[2zm6]], chain O]]
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[[Image:RPS17.png|left|200px|thumb|Crystal Structure of Ribosomal protein S17 from [[2zm6]], chain Q]]
{{STRUCTURE_2zm6| PDB=2zm6 | SIZE=300| SCENE= |right|CAPTION=Ribosomal protein S17 from [[2zm6]], chain Q }}
{{STRUCTURE_2zm6| PDB=2zm6 | SIZE=300| SCENE= |right|CAPTION=Ribosomal protein S17 from [[2zm6]], chain Q }}
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Ribosomal protein S17 (RPS17) is one of the 22 proteins which belong to the small subunit of the ribosome. It binds to the 5' end of 16S RRNA and may participate in the recognition of termination codons. The images at the left and at the right correspond to one representative RPS17, ''i.e.'' the crystal structure of Ribosomal protein S15 from ''Thermus thermophilus'' ([[2zm6]], chain Q).
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== 3D Structures of Ribosomal protein S17 ==
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S17
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1rip – TtRPS17 – NMR - Geobacillus stearothermophilus
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1rq6 – RPS17 - Methanothermobacter
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S17 in small ribosomal subunit
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2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus
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2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub - TtRPS17 in 30S ribosomal subunit+16S RRNA+RNA fragment
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3kc4 – EcRPS17 in 30S ribosomal subunit – Escherichia coli
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3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofa, 3ofb, 3ofx, 3ofy, 3ofo, 3ofp, 3or9, 3ora - EcRPS17 in 30S ribosomal subunit+16S RRNA
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1i94, 1fka - TtRPS17 in 30S ribosomal subunit+16S RRNA
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1p87, 1p6g - EcRPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM
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3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
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S17 in small + large ribosomal subunit
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1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
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S17 in small ribosomal subunit+ chain release factor
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3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA
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3d5a, 3d5c - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
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2b64 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
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2b9m - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
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2x9r, 2x9t, 2wh1, 2wh3 - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA
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3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
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S17 in small ribosomal subunit+tRNA+mRNA
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2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
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2hgp - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
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2i2p, 2i2u - EcRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
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2hgr - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
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1yl4 – TtRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
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1pns – EcRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA
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1xnq, 1xnr- TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
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S17 in small ribosomal subunit+A-site tRNA
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2uxd , 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
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1n32, 1n33 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
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1n34 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
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1xmo, 1xmq - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
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2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
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S17 in small ribosomal subunit+P-site tRNA
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3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
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3i8h, 3i9b, 3i9d - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA
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1ibk - TtRPS17 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
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2wwl - EcRPS17 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli
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3i1q - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA
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3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
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S17 in small ribosomal subunit+A-site tRNA+P-site tRNA
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1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
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S17 in small ribosomal subunit+P-site tRNA+E-site tRNA
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2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
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2b9o - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
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2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA
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S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
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2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM
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1jgo, 1jgp, 1jgq, 1gix - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
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3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
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S17 in small ribosomal subunit + antibiotics
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1i95 - TtRPS17 in 30S ribosomal subunit+16S RRNA+edeine
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1i97 - TtRPS17 in 30S ribosomal subunit+16S RRNA+tetracycline
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1hnw - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+tetracycline
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1hnx - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+pactamycin
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1hnz - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+hygromycin B
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1fjg - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+streptomycin
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2qbb, 2qb9 - EcRPS17 in 30S ribosomal subunit+16S RRNA+kasugamyin
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2hhh - TtRPS17 in 30S ribosomal subunit+16S RRNA+kasugamyin
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2f4v - TtRPS17 in 30S ribosomal subunit+16S RRNA+designed antibiotic
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1vs5, 1vs7 - EcRPS17 in 30S ribosomal subunit+16S RRNA+gentamicin
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2qan, 2qal - EcRPS17 in 30S ribosomal subunit+16S RRNA+neomycin
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2qou, 2qow - EcRPS17 in 30S ribosomal subunit+16S RRNA+spectinomycin
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2qoy, 2qp0 - EcRPS17 in 30S ribosomal subunit+16S RRNA+spectinomycin+neomycin
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2z4k, 2z4m – EcRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin
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2j00, 2j02 - TtRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA
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2wdg, 2wdh, 2wdk, 2wdm - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin
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3knj, 3knh - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin
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3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin
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S17 in small ribosomal subunit + ribosome recycling factor
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2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor
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2qbh, 2qbj - EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin
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2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
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S17 in small ribosomal subunit + elongation factor
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2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G
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2wrn, 2wrq - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
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3fic - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
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3fih - EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU
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3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P
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S17 in small ribosomal subunit + translation initiation factor
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1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA
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1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA
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S17 in small ribosomal subunit + various proteins
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3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA
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1voq, 1vos , 1vov, 1vox, 1voz - EcRPS17 in 30S ribosomal subunit+protein Y+16S RRNA
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2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA
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S17 in part of small ribosomal subunit
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3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA
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1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment

Revision as of 06:58, 26 October 2010

Image:RPS17.png
Crystal Structure of Ribosomal protein S17 from 2zm6, chain Q

Template:STRUCTURE 2zm6

Ribosomal protein S17 (RPS17) is one of the 22 proteins which belong to the small subunit of the ribosome. It binds to the 5' end of 16S RRNA and may participate in the recognition of termination codons. The images at the left and at the right correspond to one representative RPS17, i.e. the crystal structure of Ribosomal protein S15 from Thermus thermophilus (2zm6, chain Q).

Contents

3D Structures of Ribosomal protein S17

S17

1rip – TtRPS17 – NMR - Geobacillus stearothermophilus 1rq6 – RPS17 - Methanothermobacter

S17 in small ribosomal subunit

2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus 2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub - TtRPS17 in 30S ribosomal subunit+16S RRNA+RNA fragment 3kc4 – EcRPS17 in 30S ribosomal subunit – Escherichia coli 3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofa, 3ofb, 3ofx, 3ofy, 3ofo, 3ofp, 3or9, 3ora - EcRPS17 in 30S ribosomal subunit+16S RRNA 1i94, 1fka - TtRPS17 in 30S ribosomal subunit+16S RRNA 1p87, 1p6g - EcRPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM 3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach

S17 in small + large ribosomal subunit

1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM

S17 in small ribosomal subunit+ chain release factor

3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA 3d5a, 3d5c - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA 2b64 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1 2b9m - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2 2x9r, 2x9t, 2wh1, 2wh3 - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA 3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA

S17 in small ribosomal subunit+tRNA+mRNA

2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet 2hgp - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA 2i2p, 2i2u - EcRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA 2hgr - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA 1yl4 – TtRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator 1pns – EcRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA 1xnq, 1xnr- TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+A-site tRNA

2uxd , 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA 1n32, 1n33 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA 1n34 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA 1xmo, 1xmq - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA 2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+P-site tRNA

3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA 3i8h, 3i9b, 3i9d - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA 1ibk - TtRPS17 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA 2wwl - EcRPS17 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli 3i1q - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA 3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA

S17 in small ribosomal subunit+A-site tRNA+P-site tRNA

1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+P-site tRNA+E-site tRNA

2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA 2b9o - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA 2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA

S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA

2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM 1jgo, 1jgp, 1jgq, 1gix - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA 3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA

S17 in small ribosomal subunit + antibiotics

1i95 - TtRPS17 in 30S ribosomal subunit+16S RRNA+edeine 1i97 - TtRPS17 in 30S ribosomal subunit+16S RRNA+tetracycline 1hnw - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+tetracycline 1hnx - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+pactamycin 1hnz - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+hygromycin B 1fjg - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+streptomycin 2qbb, 2qb9 - EcRPS17 in 30S ribosomal subunit+16S RRNA+kasugamyin 2hhh - TtRPS17 in 30S ribosomal subunit+16S RRNA+kasugamyin 2f4v - TtRPS17 in 30S ribosomal subunit+16S RRNA+designed antibiotic 1vs5, 1vs7 - EcRPS17 in 30S ribosomal subunit+16S RRNA+gentamicin 2qan, 2qal - EcRPS17 in 30S ribosomal subunit+16S RRNA+neomycin 2qou, 2qow - EcRPS17 in 30S ribosomal subunit+16S RRNA+spectinomycin 2qoy, 2qp0 - EcRPS17 in 30S ribosomal subunit+16S RRNA+spectinomycin+neomycin 2z4k, 2z4m – EcRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin 2j00, 2j02 - TtRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA 2wdg, 2wdh, 2wdk, 2wdm - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin 3knj, 3knh - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin 3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin

S17 in small ribosomal subunit + ribosome recycling factor

2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor 2qbh, 2qbj - EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin 2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet

S17 in small ribosomal subunit + elongation factor

2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G 2wrn, 2wrq - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4 3fic - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A 3fih - EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU 3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P

S17 in small ribosomal subunit + translation initiation factor

1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA 1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA

S17 in small ribosomal subunit + various proteins

3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA 1voq, 1vos , 1vov, 1vox, 1voz - EcRPS17 in 30S ribosomal subunit+protein Y+16S RRNA 2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA

S17 in part of small ribosomal subunit

3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA 1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Jaime Prilusky

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