Ribosomal protein S17
From Proteopedia
| Line 9: | Line 9: | ||
| - | S17 | + | |
| + | === S17 === | ||
| + | |||
1rip – TtRPS17 – NMR - Geobacillus stearothermophilus | 1rip – TtRPS17 – NMR - Geobacillus stearothermophilus | ||
1rq6 – RPS17 - Methanothermobacter | 1rq6 – RPS17 - Methanothermobacter | ||
| - | S17 in small ribosomal subunit | + | |
| + | === S17 in small ribosomal subunit === | ||
| + | |||
2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus | 2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus | ||
| Line 24: | Line 28: | ||
3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach | 3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach | ||
| - | S17 in small + large ribosomal subunit | + | |
| + | === S17 in small + large ribosomal subunit === | ||
| + | |||
1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM | 1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM | ||
| - | S17 in small ribosomal subunit+ chain release factor | + | |
| + | === S17 in small ribosomal subunit+ chain release factor === | ||
| + | |||
3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA | 3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA | ||
| Line 37: | Line 45: | ||
3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA | 3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA | ||
| - | S17 in small ribosomal subunit+tRNA+mRNA | + | |
| + | === S17 in small ribosomal subunit+tRNA+mRNA === | ||
| + | |||
2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet | 2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet | ||
| Line 47: | Line 57: | ||
1xnq, 1xnr- TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA | 1xnq, 1xnr- TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA | ||
| - | S17 in small ribosomal subunit+A-site tRNA | + | |
| + | === S17 in small ribosomal subunit+A-site tRNA === | ||
| + | |||
2uxd , 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA | 2uxd , 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA | ||
| Line 55: | Line 67: | ||
2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA | 2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA | ||
| - | S17 in small ribosomal subunit+P-site tRNA | + | |
| + | === S17 in small ribosomal subunit+P-site tRNA === | ||
| + | |||
3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA | 3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA | ||
| Line 64: | Line 78: | ||
3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA | 3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA | ||
| - | S17 in small ribosomal subunit+A-site tRNA+P-site tRNA | + | |
| + | === S17 in small ribosomal subunit+A-site tRNA+P-site tRNA === | ||
| + | |||
1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA | 1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA | ||
| - | S17 in small ribosomal subunit+P-site tRNA+E-site tRNA | + | |
| + | === S17 in small ribosomal subunit+P-site tRNA+E-site tRNA === | ||
| + | |||
2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA | 2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA | ||
| Line 74: | Line 92: | ||
2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA | 2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA | ||
| - | S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA | + | |
| + | === S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA === | ||
| + | |||
2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM | 2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM | ||
| Line 80: | Line 100: | ||
3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA | 3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA | ||
| - | S17 in small ribosomal subunit + antibiotics | + | |
| + | === S17 in small ribosomal subunit + antibiotics === | ||
| + | |||
1i95 - TtRPS17 in 30S ribosomal subunit+16S RRNA+edeine | 1i95 - TtRPS17 in 30S ribosomal subunit+16S RRNA+edeine | ||
| Line 101: | Line 123: | ||
3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin | 3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin | ||
| - | S17 in small ribosomal subunit + ribosome recycling factor | + | |
| + | === S17 in small ribosomal subunit + ribosome recycling factor === | ||
2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor | 2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor | ||
| Line 107: | Line 130: | ||
2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet | 2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet | ||
| - | S17 in small ribosomal subunit + elongation factor | + | |
| + | === S17 in small ribosomal subunit + elongation factor === | ||
| + | |||
2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G | 2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G | ||
| Line 115: | Line 140: | ||
3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P | 3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P | ||
| - | S17 in small ribosomal subunit + translation initiation factor | + | |
| + | === S17 in small ribosomal subunit + translation initiation factor === | ||
| + | |||
1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA | 1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA | ||
1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA | 1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA | ||
| - | S17 in small ribosomal subunit + various proteins | + | |
| + | === S17 in small ribosomal subunit + various proteins === | ||
| + | |||
3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA | 3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA | ||
| Line 126: | Line 155: | ||
2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA | 2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA | ||
| - | S17 in part of small ribosomal subunit | + | |
| + | === S17 in part of small ribosomal subunit === | ||
| + | |||
3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA | 3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA | ||
1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment | 1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment | ||
Revision as of 07:11, 26 October 2010
Ribosomal protein S17 (RPS17) is one of the 22 proteins which belong to the small subunit of the ribosome. It binds to the 5' end of 16S RRNA and may participate in the recognition of termination codons. The images at the left and at the right correspond to one representative RPS17, i.e. the crystal structure of Ribosomal protein S15 from Thermus thermophilus (2zm6, chain Q).
3D Structures of Ribosomal protein S17
S17
1rip – TtRPS17 – NMR - Geobacillus stearothermophilus 1rq6 – RPS17 - Methanothermobacter
S17 in small ribosomal subunit
2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus 2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub - TtRPS17 in 30S ribosomal subunit+16S RRNA+RNA fragment 3kc4 – EcRPS17 in 30S ribosomal subunit – Escherichia coli 3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofa, 3ofb, 3ofx, 3ofy, 3ofo, 3ofp, 3or9, 3ora - EcRPS17 in 30S ribosomal subunit+16S RRNA 1i94, 1fka - TtRPS17 in 30S ribosomal subunit+16S RRNA 1p87, 1p6g - EcRPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM 3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
S17 in small + large ribosomal subunit
1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
S17 in small ribosomal subunit+ chain release factor
3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA 3d5a, 3d5c - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA 2b64 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1 2b9m - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2 2x9r, 2x9t, 2wh1, 2wh3 - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA 3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
S17 in small ribosomal subunit+tRNA+mRNA
2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet 2hgp - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA 2i2p, 2i2u - EcRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA 2hgr - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA 1yl4 – TtRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator 1pns – EcRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA 1xnq, 1xnr- TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
S17 in small ribosomal subunit+A-site tRNA
2uxd , 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA 1n32, 1n33 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA 1n34 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA 1xmo, 1xmq - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA 2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
S17 in small ribosomal subunit+P-site tRNA
3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA 3i8h, 3i9b, 3i9d - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA 1ibk - TtRPS17 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA 2wwl - EcRPS17 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli 3i1q - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA 3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
S17 in small ribosomal subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
S17 in small ribosomal subunit+P-site tRNA+E-site tRNA
2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA 2b9o - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA 2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA
S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM 1jgo, 1jgp, 1jgq, 1gix - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA 3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
S17 in small ribosomal subunit + antibiotics
1i95 - TtRPS17 in 30S ribosomal subunit+16S RRNA+edeine 1i97 - TtRPS17 in 30S ribosomal subunit+16S RRNA+tetracycline 1hnw - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+tetracycline 1hnx - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+pactamycin 1hnz - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+hygromycin B 1fjg - TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+streptomycin 2qbb, 2qb9 - EcRPS17 in 30S ribosomal subunit+16S RRNA+kasugamyin 2hhh - TtRPS17 in 30S ribosomal subunit+16S RRNA+kasugamyin 2f4v - TtRPS17 in 30S ribosomal subunit+16S RRNA+designed antibiotic 1vs5, 1vs7 - EcRPS17 in 30S ribosomal subunit+16S RRNA+gentamicin 2qan, 2qal - EcRPS17 in 30S ribosomal subunit+16S RRNA+neomycin 2qou, 2qow - EcRPS17 in 30S ribosomal subunit+16S RRNA+spectinomycin 2qoy, 2qp0 - EcRPS17 in 30S ribosomal subunit+16S RRNA+spectinomycin+neomycin 2z4k, 2z4m – EcRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin 2j00, 2j02 - TtRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA 2wdg, 2wdh, 2wdk, 2wdm - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin 3knj, 3knh - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin 3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin
S17 in small ribosomal subunit + ribosome recycling factor
2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor 2qbh, 2qbj - EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin 2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
S17 in small ribosomal subunit + elongation factor
2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G 2wrn, 2wrq - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4 3fic - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A 3fih - EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU 3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P
S17 in small ribosomal subunit + translation initiation factor
1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA 1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA
S17 in small ribosomal subunit + various proteins
3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA 1voq, 1vos , 1vov, 1vox, 1voz - EcRPS17 in 30S ribosomal subunit+protein Y+16S RRNA 2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA
S17 in part of small ribosomal subunit
3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA 1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment
