2pkq
From Proteopedia
(New page: 200px<br /><applet load="2pkq" size="450" color="white" frame="true" align="right" spinBox="true" caption="2pkq, resolution 3.60Å" /> '''Crystal structure of...) |
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| - | [[Image:2pkq.gif|left|200px]]<br /><applet load="2pkq" size=" | + | [[Image:2pkq.gif|left|200px]]<br /><applet load="2pkq" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="2pkq, resolution 3.60Å" /> | caption="2pkq, resolution 3.60Å" /> | ||
'''Crystal structure of the photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase, complexed with NADP'''<br /> | '''Crystal structure of the photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase, complexed with NADP'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2PKQ is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea] with SO4 and NDP as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Glyceraldehyde-3-phosphate_dehydrogenase_(NADP(+))_(phosphorylating) Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.13 1.2.1.13] Full crystallographic information is available from [http:// | + | 2PKQ is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=NDP:'>NDP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Glyceraldehyde-3-phosphate_dehydrogenase_(NADP(+))_(phosphorylating) Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.13 1.2.1.13] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PKQ OCA]. |
==Reference== | ==Reference== | ||
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[[Category: rossman fold]] | [[Category: rossman fold]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:19:48 2008'' |
Revision as of 10:19, 23 January 2008
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Crystal structure of the photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase, complexed with NADP
Overview
Chloroplast glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a, light-regulated, NAD(P)H-dependent enzyme involved in plant photosynthetic, carbon reduction. Unlike lower photosynthetic organisms, which only, contain A(4)-GAPDH, the major GAPDH isoform of land plants is made up of A, and B subunits, the latter containing a C-terminal extension (CTE) with, fundamental regulatory functions. Light-activation of AB-GAPDH depends on, the redox state of a pair of cysteines of the CTE, which can form a, disulfide bond under control of thioredoxin f, leading to specific, inhibition of the NADPH-dependent activity. The tridimensional structure, of A(2)B(2)-GAPDH from spinach chloroplasts, crystallized in the oxidized, state, shows that each disulfide-containing CTE is docked into a deep, cleft between a pair of A and B subunits. The structure of the CTE was, derived from crystallographic data and computational modeling and, confirmed by site-specific mutagenesis. Structural analysis of oxidized, A(2)B(2)-GAPDH and chimeric mutant [A+CTE](4)-GAPDH revealed that Arg-77, which is essential for coenzyme specificity and high NADPH-dependent, activity, fails to interact with NADP in these kinetically inhibited GAPDH, tetramers and is attracted instead by negative residues of oxidized CTE., Other subtle changes in catalytic domains and overall conformation of the, tetramers were noticed in oxidized A(2)B(2)-GAPDH and [A+CTE](4)-GAPDH, compared with fully active A(4)-GAPDH. The CTE is envisioned as a, redox-sensitive regulatory domain that can force AB-GAPDH into a, kinetically inhibited conformation under oxidizing conditions, which also, occur during dark inactivation of the enzyme in vivo.
About this Structure
2PKQ is a Protein complex structure of sequences from Spinacia oleracea with and as ligands. Active as Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating), with EC number 1.2.1.13 Full crystallographic information is available from OCA.
Reference
Molecular mechanism of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase., Fermani S, Sparla F, Falini G, Martelli PL, Casadio R, Pupillo P, Ripamonti A, Trost P, Proc Natl Acad Sci U S A. 2007 Jun 26;104(26):11109-14. Epub 2007 Jun 15. PMID:17573533
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