2hye
From Proteopedia
(New page: 200px<br /> <applet load="2hye" size="450" color="white" frame="true" align="right" spinBox="true" caption="2hye, resolution 3.1Å" /> '''Crystal Structure of...) |
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| - | [[Image:2hye.gif|left|200px]]<br /> | + | [[Image:2hye.gif|left|200px]]<br /><applet load="2hye" size="350" color="white" frame="true" align="right" spinBox="true" |
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caption="2hye, resolution 3.1Å" /> | caption="2hye, resolution 3.1Å" /> | ||
'''Crystal Structure of the DDB1-Cul4A-Rbx1-SV5V Complex'''<br /> | '''Crystal Structure of the DDB1-Cul4A-Rbx1-SV5V Complex'''<br /> | ||
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==Overview== | ==Overview== | ||
Protein ubiquitination is a common form of post-translational modification, that regulates a broad spectrum of protein substrates in diverse cellular, pathways. Through a three-enzyme (E1-E2-E3) cascade, the attachment of, ubiquitin to proteins is catalysed by the E3 ubiquitin ligase, which is, best represented by the superfamily of the cullin-RING complexes., Conserved from yeast to human, the DDB1-CUL4-ROC1 complex is a recently, identified cullin-RING ubiquitin ligase, which regulates DNA repair, DNA, replication and transcription, and can also be subverted by pathogenic, viruses to benefit viral infection. Lacking a canonical SKP1-like cullin, adaptor and a defined substrate recruitment module, how the DDB1-CUL4-ROC1, E3 apparatus is assembled for ubiquitinating various substrates remains, unclear. Here we present crystallographic analyses of the virally hijacked, form of the human DDB1-CUL4A-ROC1 machinery, which show that DDB1 uses one, beta-propeller domain for cullin scaffold binding and a variably attached, separate double-beta-propeller fold for substrate presentation. Through, tandem-affinity purification of human DDB1 and CUL4A complexes followed by, mass spectrometry analysis, we then identify a novel family of WD40-repeat, proteins, which directly bind to the double-propeller fold of DDB1 and, serve as the substrate-recruiting module of the E3. Together, our, structural and proteomic results reveal the structural mechanisms and, molecular logic underlying the assembly and versatility of a new family of, cullin-RING E3 complexes. | Protein ubiquitination is a common form of post-translational modification, that regulates a broad spectrum of protein substrates in diverse cellular, pathways. Through a three-enzyme (E1-E2-E3) cascade, the attachment of, ubiquitin to proteins is catalysed by the E3 ubiquitin ligase, which is, best represented by the superfamily of the cullin-RING complexes., Conserved from yeast to human, the DDB1-CUL4-ROC1 complex is a recently, identified cullin-RING ubiquitin ligase, which regulates DNA repair, DNA, replication and transcription, and can also be subverted by pathogenic, viruses to benefit viral infection. Lacking a canonical SKP1-like cullin, adaptor and a defined substrate recruitment module, how the DDB1-CUL4-ROC1, E3 apparatus is assembled for ubiquitinating various substrates remains, unclear. Here we present crystallographic analyses of the virally hijacked, form of the human DDB1-CUL4A-ROC1 machinery, which show that DDB1 uses one, beta-propeller domain for cullin scaffold binding and a variably attached, separate double-beta-propeller fold for substrate presentation. Through, tandem-affinity purification of human DDB1 and CUL4A complexes followed by, mass spectrometry analysis, we then identify a novel family of WD40-repeat, proteins, which directly bind to the double-propeller fold of DDB1 and, serve as the substrate-recruiting module of the E3. Together, our, structural and proteomic results reveal the structural mechanisms and, molecular logic underlying the assembly and versatility of a new family of, cullin-RING E3 complexes. | ||
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| - | ==Disease== | ||
| - | Known disease associated with this structure: Xeroderma pigmentosum, group E, subtype 2 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=600045 600045]] | ||
==About this Structure== | ==About this Structure== | ||
| - | 2HYE is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Simian_virus_40 Simian virus 40] with ZN as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http:// | + | 2HYE is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Simian_virus_40 Simian virus 40] with <scene name='pdbligand=ZN:'>ZN</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HYE OCA]. |
==Reference== | ==Reference== | ||
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[[Category: zinc finger]] | [[Category: zinc finger]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:31:48 2008'' |
Revision as of 10:31, 23 January 2008
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Crystal Structure of the DDB1-Cul4A-Rbx1-SV5V Complex
Overview
Protein ubiquitination is a common form of post-translational modification, that regulates a broad spectrum of protein substrates in diverse cellular, pathways. Through a three-enzyme (E1-E2-E3) cascade, the attachment of, ubiquitin to proteins is catalysed by the E3 ubiquitin ligase, which is, best represented by the superfamily of the cullin-RING complexes., Conserved from yeast to human, the DDB1-CUL4-ROC1 complex is a recently, identified cullin-RING ubiquitin ligase, which regulates DNA repair, DNA, replication and transcription, and can also be subverted by pathogenic, viruses to benefit viral infection. Lacking a canonical SKP1-like cullin, adaptor and a defined substrate recruitment module, how the DDB1-CUL4-ROC1, E3 apparatus is assembled for ubiquitinating various substrates remains, unclear. Here we present crystallographic analyses of the virally hijacked, form of the human DDB1-CUL4A-ROC1 machinery, which show that DDB1 uses one, beta-propeller domain for cullin scaffold binding and a variably attached, separate double-beta-propeller fold for substrate presentation. Through, tandem-affinity purification of human DDB1 and CUL4A complexes followed by, mass spectrometry analysis, we then identify a novel family of WD40-repeat, proteins, which directly bind to the double-propeller fold of DDB1 and, serve as the substrate-recruiting module of the E3. Together, our, structural and proteomic results reveal the structural mechanisms and, molecular logic underlying the assembly and versatility of a new family of, cullin-RING E3 complexes.
About this Structure
2HYE is a Protein complex structure of sequences from Homo sapiens and Simian virus 40 with as ligand. Full crystallographic information is available from OCA.
Reference
Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery., Angers S, Li T, Yi X, MacCoss MJ, Moon RT, Zheng N, Nature. 2006 Oct 5;443(7111):590-3. PMID:16964240
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