2itm
From Proteopedia
(New page: 200px<br /><applet load="2itm" size="450" color="white" frame="true" align="right" spinBox="true" caption="2itm, resolution 2.10Å" /> '''Crystal structure of...) |
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| - | [[Image:2itm.gif|left|200px]]<br /><applet load="2itm" size=" | + | [[Image:2itm.gif|left|200px]]<br /><applet load="2itm" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="2itm, resolution 2.10Å" /> | caption="2itm, resolution 2.10Å" /> | ||
'''Crystal structure of the E. coli xylulose kinase complexed with xylulose'''<br /> | '''Crystal structure of the E. coli xylulose kinase complexed with xylulose'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2ITM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with XUL, SO4 and NH4 as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Xylulokinase Xylulokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.17 2.7.1.17] Full crystallographic information is available from [http:// | + | 2ITM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=XUL:'>XUL</scene>, <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=NH4:'>NH4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Xylulokinase Xylulokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.17 2.7.1.17] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ITM OCA]. |
==Reference== | ==Reference== | ||
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[[Category: xylulose]] | [[Category: xylulose]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:31:00 2008'' |
Revision as of 13:31, 23 January 2008
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Crystal structure of the E. coli xylulose kinase complexed with xylulose
Overview
The primary metabolic route for D-xylose, the second most abundant sugar, in nature, is via the pentose phosphate pathway after a two-step or, three-step conversion to xylulose-5-phosphate. Xylulose kinase (XK; EC, 2.7.1.17) phosphorylates D-xylulose, the last step in this conversion. The, apo and D-xylulose-bound crystal structures of Escherichia coli XK have, been determined and show a dimer composed of two domains separated by an, open cleft. XK dimerization was observed directly by a cryo-EM, reconstruction at 36 A resolution. Kinetic studies reveal that XK has a, weak substrate-independent MgATP-hydrolyzing activity, and phosphorylates, several sugars and polyols with low catalytic efficiency. Binding of, pentulose and MgATP to form the reactive ternary complex is strongly, synergistic. Although the steady-state kinetic mechanism of XK is formally, random, a path is preferred in which D-xylulose binds before MgATP., Modelling of MgATP binding to XK and the accompanying conformational, change suggests that sugar binding is accompanied by a dramatic, hinge-bending movement that enhances interactions with MgATP, explaining, the observed synergism. A catalytic mechanism is proposed and supported by, relevant site-directed mutants.
About this Structure
2ITM is a Single protein structure of sequence from Escherichia coli with , and as ligands. Active as Xylulokinase, with EC number 2.7.1.17 Full crystallographic information is available from OCA.
Reference
Structural and kinetic studies of induced fit in xylulose kinase from Escherichia coli., Di Luccio E, Petschacher B, Voegtli J, Chou HT, Stahlberg H, Nidetzky B, Wilson DK, J Mol Biol. 2007 Jan 19;365(3):783-98. Epub 2006 Oct 25. PMID:17123542
Page seeded by OCA on Wed Jan 23 15:31:00 2008
Categories: Escherichia coli | Single protein | Xylulokinase | Luccio, E.di. | Voegtli, J. | Wilson, D.K. | NH4 | SO4 | XUL | Atpase | Fggy kinase | Kinase | Xylulose
