User:Eric Martz/Sandbox 13

(Difference between revisions)

Revision as of 05:47, 25 May 2011

Sequence Alignment Tools

What I want:

% identity vs. length of each chain and number of identical residues/chain length for each chain
colors that indicate identity/similarity/difference
ability to block a region of the alignment and get identity and length for that region (could cut and paste a new job ...)

Jalview: seems to be mostly an alignment editing tool.

EBI Clustal

RCSB Compare Structures: Smith-Waterman does #1,#2 but only for sequences of 3D structures.

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-	RCSB Compare Structures: Smith-Waterman does #1 but only for sequences of 3D structures.	+	RCSB Compare Structures: Smith-Waterman does #1,#2 but only for sequences of 3D structures.