Temperature color schemes

From Proteopedia

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Revision as of 03:27, 27 June 2011

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Fixed vs. Relative

Jmol offers two methods for coloring by temperature value. (For an introduction to the temperature value or B factor, please see Temperature value.)

SAT colors button	Jmol command	Blue	White	Red
temperature, fixed	color fixedTemperature	0	50	100
temperature, relative	color relativeTemperature*	minimum value	unclear	maximum value

*The relativeTemperature color scheme is the same as the temperature color scheme.

Examples

spinqualitylabelsall models Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

Resolution, PDB ID	Min	Av	Rel. White	Max
1cbn	2	5	11	20
1io1	4	29	36	68
1uwb	10	67	54	100
3a8n	4	107	105	203
3lvh	50	103	--	328

Other examples:

• 2zqp 6.0 Å Temperature min/av/max: 328/328/328. Fixed is red; relative is white.
• 1bdx 6.0 Å Temperature min/av/max: 30/30/30. Fixed is light blue; relative is white.
• 1qd7 5.5 Å Temperature min/av/max: 0.0/19/102. Fixed & relative seem identical.