This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Temperature color schemes
From Proteopedia
(→Examples) |
(→Fixed vs. Relative) |
||
| Line 2: | Line 2: | ||
[[Jmol]] offers two methods for coloring by [[temperature value]]. (For an introduction to the temperature value or B factor, please see [[Temperature value]].) | [[Jmol]] offers two methods for coloring by [[temperature value]]. (For an introduction to the temperature value or B factor, please see [[Temperature value]].) | ||
| - | <center><table cellpadding="2" cellspacing="3" | + | <center> |
| + | Color Mapping to Temperature Values | ||
| + | <table cellpadding="2" cellspacing="3" | ||
style="background-color:#f4f0ec;text-align:center;"> | style="background-color:#f4f0ec;text-align:center;"> | ||
<tr style="background-color:#e8e4e0;"> | <tr style="background-color:#e8e4e0;"> | ||
Revision as of 03:38, 27 June 2011
Fixed vs. Relative
Jmol offers two methods for coloring by temperature value. (For an introduction to the temperature value or B factor, please see Temperature value.)
Color Mapping to Temperature Values
|
SAT colors button |
Blue |
White |
Red |
|
|---|---|---|---|---|
|
temperature, fixed |
color fixedTemperature |
0 |
50 |
100 |
|
temperature, relative |
color relativeTemperature* |
minimum |
unclear |
maximum |
*The relativeTemperature color scheme is the same as the temperature color scheme.
Examples
|
|
Resolution, PDB ID |
Temperature values |
|||
|---|---|---|---|---|
|
Min |
Av |
Rel. White |
Max |
|
|
2 |
5 |
11 |
20 |
|
|
4 |
29 |
36 |
68 |
|
|
10 |
67 |
54 |
100 |
|
|
4 |
107 |
105 |
203 |
|
|
50 |
103 |
-- |
328 |
|
Other examples:
