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Response regulator

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== 3D Structures of response regulator ==
== 3D Structures of response regulator ==
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[[3sft]] – TmCheB methyltransferase catalytic domain – Thermotoga maritima<br />
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[[1p2f]] – TmDrrB<br />
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[[3gl9]], [[3dgf]] – TmRR<br />
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[[3snk]] – CheY-like – Mesorhizobium loti<br />
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[[3crn]], [[3cg4]] - CheY-like – Methanospirillum hungatei<br />
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[[1ixm]] – BsSpo0B<br />
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[[1nat]] – BsSPo0F<br />
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[[1srr]] - BsSPo0F (mutant) <br />
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[[3p3q]] – McMmoQ (mutant) – Methylococcus capsulatus<br />
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[[3ljx]] – McMmoQ residues 20-298<br />
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[[3n0r]] – CvPhyR – Caulobacter vibrioides<br />
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[[1m5t]], [[1m5u]] - CvDivK<br />
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[[3n53]] – RR – Pelobacter carbinolicus<br />
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[[3nhm]] – MxRR – Myxococcus xanthus<br />
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[[3kto]] - RR – Pseudoalteromonas atlantica<br />
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[[3f7a]], [[3eq2]] – PaRssB – Pseudomonas aeruginosa<br />
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[[3es2]] – PaRssB phosphatase domain<br />
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[[3i5b]] – PaWpsR GGDEF domain<br />
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[[3i5c]] - PaWpsR GGDEF domain/GCN4 leucine zipper<br />
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[[1yio]], [[1zn2 – PfStyR – Pseudomonas fluorescens<br />
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[[3hdv]] – RR – Pseudomonas putida<br />
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[[3i5a]] – WpsR – Pseudomonas syringae<br />
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[[3heb]] – CheY – Rhodospirillum rubrum<br />
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[[3eqz]] – CpRR – Colwellia psychrerythraea<br />
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[[2zay]] – RR residues 150-285 – Desulfuromonas acetoxidans<br />
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[[2rdm]] – RR (mutant) – Sinorhizobium medicae<br />
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[[1xhe]] – EcArcA (mutant) - Escherichia coli<br />
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[[1jbe]] - EcCheY<br />
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[[1nxo]], [[1nxp]], [[1nxs]], [[1nxt]], [[1nxv]], [[1nxw]], [[1nxx]] – SpRR MICA receiver domain<br />
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[[2gwr]] – MtMtrA]] - Mycobacterium tuberculosis<br />
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[[1ys6]] – MtPrrA<br />
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[[1k66]] – ToRcpB – Tolypothrix<br />
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[[1k68]] – ToRcpA<br />
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[[3p01]] – RR residues 134-315 – Nostoc<br />
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[[3ilh]] – RR – Cytophaga hutchinsonii<br />
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[[3c3w]] – MtDosR <br />
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[[2qvg]] – RR – Legionella pneumophila<br />
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[[2qr3]] – RR – Bacterioides fragilis<br />
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===Response regulator signal receiving domain===
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[[2qxy]] – TmRR <br />
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[[3i42]] - CheY-like – Methylobacillus flagellatus<br />
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[[2zwm]]– BsYycF <br />
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[[1mvo]] - BsPhoP <br />
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[[3gkg]], [[2i6f]] – MxFrzS <br />
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[[2nt3]], [[2nt4]] - MxFrzS (mutant) <br />
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[[3lte]] – RR – Bermanella marisrubri<br />
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[[3hv2]] – PfRR <br />
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[[3kht]] – RR – Hahella chejuensis<br />
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[[3jte]] – CtRR]] - Clostridium thermocellum<br />
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[[3cnb]] – CpRR <br />
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[[3c3m]] – RR – Methanoculleus marisnigri<br />
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[[2qsj]] – LuxR – Silicibacter pomeroyi<br />
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[[2pln]] – RR – Helicobacter pylori<br />
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[[2jb9]], [[2jba]] – EcPhoB (mutant) <br />
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[[3lua]] – CtRR<br />
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[[3lsg]] – YesN – Fusobacterium nucleatum<br />
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[[3cz5]] – LuxR – Aurantimonas<br />
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[[2qzj]] – RR – Clostridium difficile<br />
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[[1a04]], [[1rnl]] – EcNarL
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===Response regulator DNA-binding domain===
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[[2zxj]] - SaYycF - Staphylococcus aureus<br />
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[[2rnj]] - SaVraR - NMR<BR />
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[[2hwv]] – VicR – Enterococcus faecalis<br />
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[[1umq]] – PrrA – Rhodobacter sphaeroides – NMR<BR />
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[[3c57]] – MtDosR <br />
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[[2pmu]] – MtPhoP
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===Response regulator complex===
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[[3nnn]] – TmDrrD signal receiving domain + BeF3<br />
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[[3nns]] – TmDrrB signal receiving domain + BeF3<br />
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[[3a0u]] - TmTrrA + Mg + BeF3<br />
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[[3a10]] - TmTrrA (mutant) + Mg + BeF3<br />
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[[3rqi]] – RR + phosphorylated aspartic acid + citrate + Ca – Burkholderia pseudomallei<br />
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[[3q15]] – BsRapH + sporulation initiation phosphotransferase – Bacillus subtilis<br />
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[[3m6m]] – RpfF residues 400-541 + RpfF protein REC domain – Xanthomonas campestris<br />
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[[1mav]], [[1mb0]], [[1mb3]] – CvDivK + metal ion<br />
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[[2wb4]] – PleD + cyclic diguanosine monophosphate + BeF3 – Caulobacter crescentus<br />
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[[2v0n]] – CvPleD residues 2-454 + cyclic diguanosine monophosphate + GTP + BeF3<br />
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[[3hzh]] – CheX + CheY + Mg + BeF3 – Borrelia burgdorferi<br />
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[[1xhf]] - EcArcA (mutant) + BeF3<br />
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[[2a9o]], [[2a9p]], [[2a9q]], [[2a9r]] – SpYycF + BeF3 – Streptococcus pneumoniae<br />
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[[1ys7]] – MtPrrA + Mg<br />
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[[1jlk]], [[1i3c]] – Rcp1 + Mn]] - Synechocystis<br />
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[[3dge]] – TmRR + SP cytoplasmic domain<br />
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[[3a0r]] – TmTrrA + histidine kinase ThkA<br />
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[[1zg1]], [[1zg5]], [[1je8]] – EcNarL DNA-binding domain + DNA
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[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 09:18, 18 August 2011

Template:STRUCTURE 1zg1

Response regulators (RR) are part of the two-component signal transduction systems which enable bacteria to sense and respond to a wide range of environments. Two-component RR is a complex of histidine kinase (sensor protein SP) and RR. The RR act as phosphorylation-activated switches. Most RR consist of N terminal shich is the signal receiving domain and C terminal which is the DNA-binding domain.


Contents

3D Structures of response regulator

3sft – TmCheB methyltransferase catalytic domain – Thermotoga maritima
1p2f – TmDrrB
3gl9, 3dgf – TmRR
3snk – CheY-like – Mesorhizobium loti
3crn, 3cg4 - CheY-like – Methanospirillum hungatei
1ixm – BsSpo0B
1nat – BsSPo0F
1srr - BsSPo0F (mutant)
3p3q – McMmoQ (mutant) – Methylococcus capsulatus
3ljx – McMmoQ residues 20-298
3n0r – CvPhyR – Caulobacter vibrioides
1m5t, 1m5u - CvDivK
3n53 – RR – Pelobacter carbinolicus
3nhm – MxRR – Myxococcus xanthus
3kto - RR – Pseudoalteromonas atlantica
3f7a, 3eq2 – PaRssB – Pseudomonas aeruginosa
3es2 – PaRssB phosphatase domain
3i5b – PaWpsR GGDEF domain
3i5c - PaWpsR GGDEF domain/GCN4 leucine zipper
1yio, [[1zn2 – PfStyR – Pseudomonas fluorescens
3hdv – RR – Pseudomonas putida
3i5a – WpsR – Pseudomonas syringae
3heb – CheY – Rhodospirillum rubrum
3eqz – CpRR – Colwellia psychrerythraea
2zay – RR residues 150-285 – Desulfuromonas acetoxidans
2rdm – RR (mutant) – Sinorhizobium medicae
1xhe – EcArcA (mutant) - Escherichia coli
1jbe - EcCheY
1nxo, 1nxp, 1nxs, 1nxt, 1nxv, 1nxw, 1nxx – SpRR MICA receiver domain
2gwr – MtMtrA]] - Mycobacterium tuberculosis
1ys6 – MtPrrA
1k66 – ToRcpB – Tolypothrix
1k68 – ToRcpA
3p01 – RR residues 134-315 – Nostoc
3ilh – RR – Cytophaga hutchinsonii
3c3w – MtDosR
2qvg – RR – Legionella pneumophila
2qr3 – RR – Bacterioides fragilis

Response regulator signal receiving domain

2qxy – TmRR
3i42 - CheY-like – Methylobacillus flagellatus
2zwm– BsYycF
1mvo - BsPhoP
3gkg, 2i6f – MxFrzS
2nt3, 2nt4 - MxFrzS (mutant)
3lte – RR – Bermanella marisrubri
3hv2 – PfRR
3kht – RR – Hahella chejuensis
3jte – CtRR]] - Clostridium thermocellum
3cnb – CpRR
3c3m – RR – Methanoculleus marisnigri
2qsj – LuxR – Silicibacter pomeroyi
2pln – RR – Helicobacter pylori
2jb9, 2jba – EcPhoB (mutant)
3lua – CtRR
3lsg – YesN – Fusobacterium nucleatum
3cz5 – LuxR – Aurantimonas
2qzj – RR – Clostridium difficile
1a04, 1rnl – EcNarL

Response regulator DNA-binding domain

2zxj - SaYycF - Staphylococcus aureus
2rnj - SaVraR - NMR
2hwv – VicR – Enterococcus faecalis
1umq – PrrA – Rhodobacter sphaeroides – NMR
3c57 – MtDosR
2pmu – MtPhoP

Response regulator complex

3nnn – TmDrrD signal receiving domain + BeF3
3nns – TmDrrB signal receiving domain + BeF3
3a0u - TmTrrA + Mg + BeF3
3a10 - TmTrrA (mutant) + Mg + BeF3
3rqi – RR + phosphorylated aspartic acid + citrate + Ca – Burkholderia pseudomallei
3q15 – BsRapH + sporulation initiation phosphotransferase – Bacillus subtilis
3m6m – RpfF residues 400-541 + RpfF protein REC domain – Xanthomonas campestris
1mav, 1mb0, 1mb3 – CvDivK + metal ion
2wb4 – PleD + cyclic diguanosine monophosphate + BeF3 – Caulobacter crescentus
2v0n – CvPleD residues 2-454 + cyclic diguanosine monophosphate + GTP + BeF3
3hzh – CheX + CheY + Mg + BeF3 – Borrelia burgdorferi
1xhf - EcArcA (mutant) + BeF3
2a9o, 2a9p, 2a9q, 2a9r – SpYycF + BeF3 – Streptococcus pneumoniae
1ys7 – MtPrrA + Mg
1jlk, 1i3c – Rcp1 + Mn]] - Synechocystis
3dge – TmRR + SP cytoplasmic domain
3a0r – TmTrrA + histidine kinase ThkA
1zg1, 1zg5, 1je8 – EcNarL DNA-binding domain + DNA

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Alexander Berchansky, Jaime Prilusky

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