1ax4
From Proteopedia
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| - | [[Image:1ax4.gif|left|200px]]<br /><applet load="1ax4" size=" | + | [[Image:1ax4.gif|left|200px]]<br /><applet load="1ax4" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1ax4, resolution 2.1Å" /> | caption="1ax4, resolution 2.1Å" /> | ||
'''TRYPTOPHANASE FROM PROTEUS VULGARIS'''<br /> | '''TRYPTOPHANASE FROM PROTEUS VULGARIS'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1AX4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Proteus_vulgaris Proteus vulgaris] with K as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Tryptophanase Tryptophanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.1 4.1.99.1] Known structural/functional Sites: <scene name='pdbsite=LPA:Pyridoxal 5'-Phosphate Binding Site'>LPA</scene>, <scene name='pdbsite=LPB:Pyridoxal 5'-Phosphate Binding Site'>LPB</scene>, <scene name='pdbsite=LPC:Pyridoxal 5'-Phosphate Binding Site'>LPC</scene>, <scene name='pdbsite=LPD:Pyridoxal 5'-Phosphate Binding Site'>LPD</scene>, <scene name='pdbsite=POA:K Binding Site'>POA</scene>, <scene name='pdbsite=POB:K Binding Site'>POB</scene>, <scene name='pdbsite=POC:K Binding Site'>POC</scene> and <scene name='pdbsite=POD:K Binding Site'>POD</scene>. Full crystallographic information is available from [http:// | + | 1AX4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Proteus_vulgaris Proteus vulgaris] with <scene name='pdbligand=K:'>K</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Tryptophanase Tryptophanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.1 4.1.99.1] Known structural/functional Sites: <scene name='pdbsite=LPA:Pyridoxal+5'-Phosphate+Binding+Site'>LPA</scene>, <scene name='pdbsite=LPB:Pyridoxal+5'-Phosphate+Binding+Site'>LPB</scene>, <scene name='pdbsite=LPC:Pyridoxal+5'-Phosphate+Binding+Site'>LPC</scene>, <scene name='pdbsite=LPD:Pyridoxal+5'-Phosphate+Binding+Site'>LPD</scene>, <scene name='pdbsite=POA:K+Binding+Site'>POA</scene>, <scene name='pdbsite=POB:K+Binding+Site'>POB</scene>, <scene name='pdbsite=POC:K+Binding+Site'>POC</scene> and <scene name='pdbsite=POD:K+Binding+Site'>POD</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AX4 OCA]. |
==Reference== | ==Reference== | ||
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[[Category: tryptophan indole-lyase]] | [[Category: tryptophan indole-lyase]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:31:58 2008'' |
Revision as of 07:31, 3 February 2008
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TRYPTOPHANASE FROM PROTEUS VULGARIS
Overview
The X-ray structure of tryptophanase (Tnase) reveals the interactions, responsible for binding of the pyridoxal 5'-phosphate (PLP) and atomic, details of the K+ binding site essential for catalysis. The structure of, holo Tnase from Proteus vulgaris (space group P2(1)2(1)2(1) with a = 115.0, A, b = 118.2 A, c = 153.7 A) has been determined at 2.1 A resolution by, molecular replacement using tyrosine phenol-lyase (TPL) coordinates. The, final model of Tnase, refined to an R-factor of 18.7%, (Rfree = 22.8%), suggests that the PLP-enzyme from observed in the structure is a, ketoenamine. PLP is bound in a cleft formed by both the small and large, domains of one subunit and the large domain of the adjacent subunit in the, so-called "catalytic" dimer. The K+ cations are located on the interface, of the subunits in the dimer. The structure of the catalytic dimer and, mode of PLP binding in Tnase resemble those found in aspartate, amino-transferase, TPL, omega-amino acid pyruvate aminotransferase, dialkylglycine decarboxylase (DGD), cystathionine beta-lyase and ornithine, decarboxylase. No structural similarity has been detected between Tnase, and the beta 2 dimer of tryptophan synthase which catalyses the same, beta-replacement reaction. The single monovalent cation binding site of, Tnase is similar to that of TPL, but differs from either of those in DGD.
About this Structure
1AX4 is a Single protein structure of sequence from Proteus vulgaris with as ligand. Active as Tryptophanase, with EC number 4.1.99.1 Known structural/functional Sites: , , , , , , and . Full crystallographic information is available from OCA.
Reference
Crystal structure of tryptophanase., Isupov MN, Antson AA, Dodson EJ, Dodson GG, Dementieva IS, Zakomirdina LN, Wilson KS, Dauter Z, Lebedev AA, Harutyunyan EH, J Mol Biol. 1998 Feb 27;276(3):603-23. PMID:9551100
Page seeded by OCA on Sun Feb 3 09:31:58 2008
Categories: Proteus vulgaris | Single protein | Tryptophanase | Antson, A.A. | Dauter, Z. | Dementieva, I.S. | Dodson, E.J. | Dodson, G.G. | Harutyunyan, E.H. | Isupov, M.N. | Lebedev, A.A. | Wilson, K.S. | Zakomirdina, L.N. | K | Monovalent cation binding site | Pyridoxal 5'-phosphate | Tryptophan biosynthesis | Tryptophan indole-lyase
