1oid
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:1oid.gif|left|200px]]<br /><applet load="1oid" size=" | + | [[Image:1oid.gif|left|200px]]<br /><applet load="1oid" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1oid, resolution 2.10Å" /> | caption="1oid, resolution 2.10Å" /> | ||
'''5'-NUCLEOTIDASE (E. COLI) WITH AN ENGINEERED DISULFIDE BRIDGE (S228C, P513C)'''<br /> | '''5'-NUCLEOTIDASE (E. COLI) WITH AN ENGINEERED DISULFIDE BRIDGE (S228C, P513C)'''<br /> | ||
| Line 7: | Line 7: | ||
==About this Structure== | ==About this Structure== | ||
| - | 1OID is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with NI as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Site: <scene name='pdbsite=AC1:Ni Binding Site For Chain A'>AC1</scene>. Full crystallographic information is available from [http:// | + | 1OID is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=NI:'>NI</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Site: <scene name='pdbsite=AC1:Ni+Binding+Site+For+Chain+A'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OID OCA]. |
==Reference== | ==Reference== | ||
| Line 24: | Line 24: | ||
[[Category: udp-sugar hydrolase]] | [[Category: udp-sugar hydrolase]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 09:58:27 2008'' |
Revision as of 07:58, 3 February 2008
|
5'-NUCLEOTIDASE (E. COLI) WITH AN ENGINEERED DISULFIDE BRIDGE (S228C, P513C)
Overview
Engineering disulfide bridges is a common technique to lock a protein, movement in a defined conformational state. We have designed two double, mutants of Escherichia coli 5'-nucleotidase to trap the enzyme in both an, open (S228C, P513C) and a closed (P90C, L424C) conformation by the, formation of disulfide bridges. The mutant proteins have been expressed, purified, and crystallized, to structurally characterize the designed, variants. The S228C, P513C is a double mutant crystallized in two, different crystal forms with three independent conformers, which differ, from each other by a rotation of up to 12 degrees of the C-terminal domain, with respect to the N-terminal domain. This finding, as well as an, analysis of the domain motion in the crystal, indicates that the enzyme, still exhibits considerable residual domain flexibility. In the double, mutant that was designed to trap the enzyme in the closed conformation, the structure analysis reveals an unexpected intermediate conformation, along the 96 degrees rotation trajectory between the open and closed, enzyme forms. A comparison of the five independent conformers analyzed in, this study shows that the domain movement of the variant enzymes is, characterized by a sliding movement of the residues of the domain, interface along the interface, which is in contrast to a classical closure, motion where the residues of the domain interface move perpendicular to, the interface.
About this Structure
1OID is a Single protein structure of sequence from Escherichia coli with as ligand. Known structural/functional Site: . Full crystallographic information is available from OCA.
Reference
Trapping a 96 degrees domain rotation in two distinct conformations by engineered disulfide bridges., Schultz-Heienbrok R, Maier T, Strater N, Protein Sci. 2004 Jul;13(7):1811-22. PMID:15215524
Page seeded by OCA on Sun Feb 3 09:58:27 2008
