Sandbox 37

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==Structure==
==Structure==
<StructureSection load='9PAP' size='400' align='left' caption='Papain (9PAP)' scene=''></StructureSection>
<StructureSection load='9PAP' size='400' align='left' caption='Papain (9PAP)' scene=''></StructureSection>
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[[Image:Ramachandran plot.JPG| right| thumb| Ramachandran plot of papain amino acid residues]]
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[[Image:Ramachandran plot.JPG| left| thumb| Ramachandran plot of papain amino acid residues]]
Papain's three-dimensional structure is at 1.65 Angstrom resolution. It consists of one polypepetide chain that is made up of 212 amino acids residues. There are three <scene name='Sandbox_37/Papain_disulfide_bonds/1'>disulfide bonds</scene> present in the enzyme that maintains the protein's structure.
Papain's three-dimensional structure is at 1.65 Angstrom resolution. It consists of one polypepetide chain that is made up of 212 amino acids residues. There are three <scene name='Sandbox_37/Papain_disulfide_bonds/1'>disulfide bonds</scene> present in the enzyme that maintains the protein's structure.

Revision as of 00:55, 14 November 2011

Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013.


Contents

Papain

Introduction

Image:Papaya.jpg
Carica papaya

is a cysteine protease that is stable and active under a wide range of conditions. The enzyme present in the leaves, latex, roots, and fruit of the papaya plant (Carica papaya).[1] The papain proteins are synthesized as inactive precursors that become active within two minutes of the plant being wounded and the latex is expelled.[2] The enzyme was first studied and isolated in the 1960's. It has a 23.4kDa theoretical molecular weight and works at an optimum pH of 6-7 and optimum temperature of 65 degrees Celsius.

Structure

Papain (9PAP)

Drag the structure with the mouse to rotate
Image:Ramachandran plot.JPG
Ramachandran plot of papain amino acid residues

Papain's three-dimensional structure is at 1.65 Angstrom resolution. It consists of one polypepetide chain that is made up of 212 amino acids residues. There are three present in the enzyme that maintains the protein's structure.


Mechanism

Image:Papain mechanism.jpg
Mechanism of papain catalysis

Function

Inhibition

[3] [4] [5] [6]

References

  1. http://www.britannica.com/EBchecked/topic/441803/papain
  2. http://www.worthington-biochem.com/pap/default.html
  3. http://www.pdb.org/pdb/explore/remediatedSequence.do?structureId=1POP&params.chainEntityStrategyStr=all
  4. http://en.wikipedia.org/wiki/Papain
  5. http://www.pdb.org/pdb/explore.do?structureId=9PAP
  6. http://www.sigmaaldrich.com/life-science/metabolomics/enzyme-explorer/analytical-enzymes/papain.html
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