2bme
From Proteopedia
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| - | [[Image:2bme.gif|left|200px]]<br /><applet load="2bme" size=" | + | [[Image:2bme.gif|left|200px]]<br /><applet load="2bme" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="2bme, resolution 1.57Å" /> | caption="2bme, resolution 1.57Å" /> | ||
'''HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A'''<br /> | '''HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2BME is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with MG, GNP, TRS and BME as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Small_monomeric_GTPase Small monomeric GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.2 3.6.5.2] Known structural/functional Site: <scene name='pdbsite=AC1:Mg Binding Site For Chain D'>AC1</scene>. Full crystallographic information is available from [http:// | + | 2BME is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=GNP:'>GNP</scene>, <scene name='pdbligand=TRS:'>TRS</scene> and <scene name='pdbligand=BME:'>BME</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Small_monomeric_GTPase Small monomeric GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.2 3.6.5.2] Known structural/functional Site: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Chain+D'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BME OCA]. |
==Reference== | ==Reference== | ||
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[[Category: vesicular transport]] | [[Category: vesicular transport]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 3 10:25:50 2008'' |
Revision as of 08:25, 3 February 2008
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HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A
Overview
The Ras-related human GTPase Rab4a is involved in the regulation of, endocytosis through the sorting and recycling of early endosomes. Towards, further insight, we have determined the three-dimensional crystal, structure of human Rab4a in its GppNHp-bound state to 1.6 Angstroms, resolution and in its GDP-bound state to 1.8 Angstroms resolution, respectively. Despite the similarity of the overall structure with other, Rab proteins, Rab4a displays significant differences. The structures are, discussed with respect to the recently determined structure of human Rab5a, and its complex with the Rab5-binding domain of the bivalent effector, Rabaptin-5. The Rab4 specific residue His39 modulates the nucleotide, binding pocket giving rise to a reduced rate for nucleotide hydrolysis and, exchange. In comparison to Rab5, Rab4a has a different GDP-bound, conformation within switch 1 region and displays shifts in position and, orientation of the hydrophobic triad. The observed differences at the, S2-L3-S3 region represent a new example of structural plasticity among Rab, proteins and may provide a structural basis to understand the differential, binding of similar effector proteins.
About this Structure
2BME is a Single protein structure of sequence from Homo sapiens with , , and as ligands. Active as Small monomeric GTPase, with EC number 3.6.5.2 Known structural/functional Site: . Full crystallographic information is available from OCA.
Reference
High resolution crystal structures of human Rab4a in its active and inactive conformations., Huber SK, Scheidig AJ, FEBS Lett. 2005 May 23;579(13):2821-9. Epub 2005 Apr 25. PMID:15907487
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