1dke

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[[Image:1dke.gif|left|200px]]<br />
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[[Image:1dke.jpg|left|200px]]<br /><applet load="1dke" size="350" color="white" frame="true" align="right" spinBox="true"
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<applet load="1dke" size="450" color="white" frame="true" align="right" spinBox="true"
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caption="1dke, resolution 2.1&Aring;" />
caption="1dke, resolution 2.1&Aring;" />
'''NI BETA HEME HUMAN HEMOGLOBIN'''<br />
'''NI BETA HEME HUMAN HEMOGLOBIN'''<br />
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==About this Structure==
==About this Structure==
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1DKE is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with SO4 and HEM as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1DKE OCA].
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1DKE is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=HEM:'>HEM</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DKE OCA].
==Reference==
==Reference==
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[[Category: oxygen transport]]
[[Category: oxygen transport]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 16:33:21 2007''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 15:40:12 2008''

Revision as of 13:40, 15 February 2008


1dke, resolution 2.1Å

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NI BETA HEME HUMAN HEMOGLOBIN

Contents

Overview

Oxygen binding by hemoglobin fixed in the T state either by, crystallization or by encapsulation in silica gels is apparently, noncooperative. However, cooperativity might be masked by different oxygen, affinities of alpha and beta subunits. Metal hybrid hemoglobins, where the, noniron metal does not bind oxygen, provide the opportunity to determine, the oxygen affinities of alpha and beta hemes separately. Previous studies, have characterized the oxygen binding by alpha(Ni2+)2beta(Fe2+)2 crystals., Here, we have determined the three-dimensional (3D) structure and oxygen, binding of alpha(Fe2+)2beta(Ni2+)2 crystals grown from polyethylene glycol, solutions. Polarized absorption spectra were recorded at different oxygen, pressures with light polarized parallel either to the b or c crystal axis, by single crystal microspectrophotometry. The oxygen pressures at 50%, saturation (p50s) are 95 +/- 3 and 87 +/- 4 Torr along the b and c crystal, axes, respectively, and the corresponding Hill coefficients are 0.96 +/-, 0.06 and 0.90 +/- 0.03. Analysis of the binding curves, taking into, account the different projections of the alpha hemes along the optical, directions, indicates that the oxygen affinity of alpha1 hemes is 1.3-fold, lower than alpha2 hemes. Inspection of the 3D structure suggests that this, inequivalence may arise from packing interactions of the Hb tetramer, within the monoclinic crystal lattice. A similar inequivalence was found, for the beta subunits of alpha(Ni2+)2beta(Fe2+)2 crystals. The average, oxygen affinity of the alpha subunits (p50 = 91 Torr) is about 1.2-fold, higher than the beta subunits (p50 = 110 Torr). In the absence of, cooperativity, this heterogeneity yields an oxygen binding curve of Hb A, with a Hill coefficient of 0.999. Since the binding curves of Hb A, crystals exhibit a Hill coefficient very close to unity, these findings, indicate that oxygen binding by T-state hemoglobin is noncooperative, in, keeping with the Monod, Wyman, and Changeux model.

Disease

Known diseases associated with this structure: Erythremias, alpha- OMIM:[141800], Erythremias, beta- OMIM:[141900], Erythrocytosis OMIM:[141850], HPFH, deletion type OMIM:[141900], Heinz body anemia OMIM:[141850], Heinz body anemias, alpha- OMIM:[141800], Heinz body anemias, beta- OMIM:[141900], Hemoglobin H disease OMIM:[141850], Hypochromic microcytic anemia OMIM:[141850], Methemoglobinemias, alpha- OMIM:[141800], Methemoglobinemias, beta- OMIM:[141900], Sickle cell anemia OMIM:[141900], Thalassemia, alpha- OMIM:[141850], Thalassemia-beta, dominant inclusion-body OMIM:[141900], Thalassemias, alpha- OMIM:[141800], Thalassemias, beta- OMIM:[141900]

About this Structure

1DKE is a Protein complex structure of sequences from Homo sapiens with and as ligands. Full crystallographic information is available from OCA.

Reference

Oxygen binding by alpha(Fe2+)2beta(Ni2+)2 hemoglobin crystals., Bruno S, Bettati S, Manfredini M, Mozzarelli A, Bolognesi M, Deriu D, Rosano C, Tsuneshige A, Yonetani T, Henry ER, Protein Sci. 2000 Apr;9(4):683-92. PMID:10794410

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