Testing Jmol 12.2.16
From Proteopedia
| Line 8: | Line 8: | ||
Alex:<br> | Alex:<br> | ||
| - | 1) It is impossible to change the color of molecules, residues, atoms etc - halos disappeared and colors are not changed. In contrast to that, it is possible to change representations - everything OK with the halos. | ||
2) When the scene was saved the orientation of the protein did not change – it was as original position of the protein. | 2) When the scene was saved the orientation of the protein did not change – it was as original position of the protein. | ||
| Line 16: | Line 15: | ||
Yossi: | Yossi: | ||
http://www.proteopedia.org/wiki/index.php/Test_3639 . Used '''Safari''' 5.04.4<br> | http://www.proteopedia.org/wiki/index.php/Test_3639 . Used '''Safari''' 5.04.4<br> | ||
| - | 1) same as Alex's 1) above. BUT I could change the background color.<br> | ||
2) again, same as Alex's 2) above. I zoomed all the way in. but when saved and viewed it was zoomed out. | 2) again, same as Alex's 2) above. I zoomed all the way in. but when saved and viewed it was zoomed out. | ||
Revision as of 11:46, 14 March 2012
Findings while testing Jmol 12.2.XX on Proteopedia:
?JMOLJAR=http://proteopedia.org/jmol12.2.16/JmolAppletSigned0.jar
Note that the About/Version will return 12.2.18_dev
- Inserting quoted text in an echo makes the whole scene to fail. Statements like this one is a ticket to failure
echo "Dealkylation ("aging")"; since the Jmol parser is unable to properly pair the nested quotes.
Alex:
2) When the scene was saved the orientation of the protein did not change – it was as original position of the protein.
3) If the scene is saved with both scene transition options “skip the zoom-out when this scene loads?’ and “skip the transition between scenes when this scene loads?” the orientation of molecule including zoom is saved, but it does not spin.
Yossi:
http://www.proteopedia.org/wiki/index.php/Test_3639 . Used Safari 5.04.4
2) again, same as Alex's 2) above. I zoomed all the way in. but when saved and viewed it was zoomed out.
Proteopedia Page Contributors and Editors (what is this?)
Jaime Prilusky, Wayne Decatur, Joseph M. Steinberger, Alexander Berchansky
