Sandbox Reserved 474

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The co-crystallized structure of CRP with phosphocholine suggest that <scene name='Sandbox_Reserved_474/Phe-66/2'>Phe-66</scene> and <scene name='Sandbox_Reserved_474/Glu-81/1'>Glu-81</scene> are two very crucial residues that mediate binding between phosphocholine and CRP[2]. More specifically, Phe-66 provides specific hydrophobic interactions with the methyl groups of PC. Similarly, Glu-81 is located on the opposite end of the pocket where it interacts well with the positively charged choline nitrogen. Present on the opposite face of the pentamer is the effector face, where the presumed <scene name='Sandbox_Reserved_474/C1q/1'>C1q</scene> and Fcγ receptors bind, and at this cleft are several residues present (<scene name='Sandbox_Reserved_474/Asp-112/1'>Asp-112</scene> and Tyr-175) which are both necessary to bind CRP to C1q [2].
The co-crystallized structure of CRP with phosphocholine suggest that <scene name='Sandbox_Reserved_474/Phe-66/2'>Phe-66</scene> and <scene name='Sandbox_Reserved_474/Glu-81/1'>Glu-81</scene> are two very crucial residues that mediate binding between phosphocholine and CRP[2]. More specifically, Phe-66 provides specific hydrophobic interactions with the methyl groups of PC. Similarly, Glu-81 is located on the opposite end of the pocket where it interacts well with the positively charged choline nitrogen. Present on the opposite face of the pentamer is the effector face, where the presumed <scene name='Sandbox_Reserved_474/C1q/1'>C1q</scene> and Fcγ receptors bind, and at this cleft are several residues present (<scene name='Sandbox_Reserved_474/Asp-112/1'>Asp-112</scene> and Tyr-175) which are both necessary to bind CRP to C1q [2].
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== Regulation of CRP expression ==
Typically, after After an acute inflammatory stimulus, CRP is synthesized by hepatocytes. CRP sits on the short arm of chromosome 1 (in humans) and it contains only one intron and it is regulated at the transcriptional level by '''cytokine interleukin-6''' (IL-6) and by '''interleukin-1β''' (IL-1β). Both IL-6 and IL-1β control expression of many acute phase protein genes through activation of several transcription factors including STAT3, C/EBP family members and Rel proteins (NF-κB).
Typically, after After an acute inflammatory stimulus, CRP is synthesized by hepatocytes. CRP sits on the short arm of chromosome 1 (in humans) and it contains only one intron and it is regulated at the transcriptional level by '''cytokine interleukin-6''' (IL-6) and by '''interleukin-1β''' (IL-1β). Both IL-6 and IL-1β control expression of many acute phase protein genes through activation of several transcription factors including STAT3, C/EBP family members and Rel proteins (NF-κB).
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Some of the biological effects/functions of CRP include: CRP's unique ability to only bind to phosphocholine ligands of either damaged or apoptotic cells. Additionally, CRP can bind to other ligands such as phosphoethanolamine, chromatin, histones, fibronectin, small nuclear ribonucleoproteins, laminin, and polycations. CRP also contains pleiotropic effects which produce both pro and anti-inflammatory responses.
 
== Structure of CRP promoter ==
== Structure of CRP promoter ==
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Based on homology modeling, CRP structure was found to be similar to that of SAP such that the subunits within the structure consisted of a two-layered β sheet with a flattened jelly roll topology [1]. Additionally, there is a presence of two calcium ions that are bound 4 Å apart by protein sidechains, and this is the site of ligand binding, which is referred to as the B side [1]. The other side, designated A hosts a single α, and the pentameric disc shows five <scene name='Sandbox_Reserved_474/Helices/1'>helices</scene> on one side with ten calcuim ions on the other. The side walls on the A face are constructed from Ser5, Arg6, Gln203, Pro206, Trp187, Arg188, Asn160, Gly177, Leu176, Try175, His95 and Asp112. The bottom side of CRP consiss of ASn158, His38, Leu37, Val94 and Asp112.
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Based on homology modeling, CRP structure was found to be similar to that of SAP such that the subunits within the structure consisted of a two-layered β sheet with a flattened jelly roll topology [1]. Additionally, there is a presence of two calcium ions that are bound 4 Å apart by protein sidechains, and this is the site of ligand binding, which is referred to as the B side [1]. The other side, designated A hosts a single α helix, and the pentameric disc shows five <scene name='Sandbox_Reserved_474/Helices/1'>helices</scene> on one side with ten calcuim ions on the other [1]. The side walls on the A face are constructed from several residues including Asp-112.
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== Biological Implications ==
 
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It is known that CRP belongs to a highly conserved pentraxin class that is responsible for innate immunity and it aids in the prevention of developing an autoimmunity <ref> author,title </ref> COmplexed or aggregated CRP activates complent, with pro-inflammatory effects. For instance, a direct correlation has been made between increased levels of CRP to complications of atherosslerosis which may include a mycardial infarction. In addition, CRP has the ability to predict future outcomes as a result of the infarction. Furthermore, it was discovered that CRP actually
 
== Structure of CRP pentamer ==
== Structure of CRP pentamer ==
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In CRP, each subunit in CRP is rotated by 22° towards the five-fold axis in comparison to SAP, where the subunits are planar to each other.Also,
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In CRP, each subunit in CRP is rotated by 22° towards the five-fold axis in comparison to SAP, where the subunits are planar to each other [1]. Furthermore, an intermoleclar ion pair only forms in CRP from residues <scene name='Sandbox_Reserved_474/Glu-197/1'>Glu-197</scene> and <scene name='Sandbox_Reserved_474/Lys-123/1'>Lys-123</scene>, but this does not occur in SAP. One could deduce that by crystallizing the structure, it causes a shift of the actual ligand-binding sites on the B side of the pentamer which can effect overall binding to other significant structures.
== Comparison of human CRP to other pentraxins ==
== Comparison of human CRP to other pentraxins ==
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release from endothelial cells
release from endothelial cells
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== Biological Implications ==
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<scene name='Sandbox_Reserved_474/Phe-66/1'>Phe-66</scene>
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It is known that CRP belongs to a highly conserved pentraxin class that is responsible for innate immunity and it aids in the prevention of developing an autoimmunity <ref> author,title </ref> COmplexed or aggregated CRP activates complent, with pro-inflammatory effects. For instance, a direct correlation has been made between increased levels of CRP to complications of atherosslerosis which may include a mycardial infarction. In addition, CRP has the ability to predict future outcomes as a result of the infarction. Furthermore, it was discovered that CRP actually
 +
Some of the biological effects/functions of CRP include: CRP's unique ability to only bind to phosphocholine ligands of either damaged or apoptotic cells. Additionally, CRP can bind to other ligands such as phosphoethanolamine, chromatin, histones, fibronectin, small nuclear ribonucleoproteins, laminin, and polycations. CRP also contains pleiotropic effects which produce both pro and anti-inflammatory responses.
== References ==
== References ==
<references/>
<references/>

Revision as of 23:53, 2 May 2012

This Sandbox is Reserved from 13/03/2012, through 01/06/2012 for use in the course "Proteins and Molecular Mechanisms" taught by Robert B. Rose at the North Carolina State University, Raleigh, NC USA. This reservation includes Sandbox Reserved 451 through Sandbox Reserved 500.
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C-Reactive Protein

Structure of Human C-Reactive Protein (PDB entry 1b09)

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