1s4g
From Proteopedia
(New page: 200px<br /> <applet load="1s4g" size="450" color="white" frame="true" align="right" spinBox="true" caption="1s4g" /> '''Somatomedin-B Domain of human plasma vitron...) |
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'''Somatomedin-B Domain of human plasma vitronectin.'''<br /> | '''Somatomedin-B Domain of human plasma vitronectin.'''<br /> | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1S4G is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with OH as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http:// | + | 1S4G is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=OH:'>OH</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S4G OCA]. |
==Reference== | ==Reference== | ||
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[[Category: vitronectin]] | [[Category: vitronectin]] | ||
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Revision as of 14:52, 15 February 2008
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Somatomedin-B Domain of human plasma vitronectin.
Overview
The three-dimensional structure of an N-terminal fragment comprising the, first 51 amino acids from human plasma vitronectin, the somatomedin B, (SMB) domain, has been determined by two-dimensional NMR approaches. An, average structure was calculated, representing the overall fold from a set, of 20 minimized structures. The core residues (18-41) overlay with a root, mean square deviation of 2.29 +/- 0.62 A. The N- and C-terminal segments, exhibit higher root mean square deviations, reflecting more flexibility in, solution and/or fewer long-range NOEs for these regions. Residues 26-30, form a unique single-turn alpha-helix, the locus where plasminogen, activator inhibitor type-1 (PAI-1) is bound. This structure of this helix, is highly homologous with that of a recombinant SMB domain solved in a, co-crystal with PAI-1 (Zhou, A., Huntington, J. A., Pannu, N. S., Carrell, R. W., and Read, R. J. (2003) Nat. Struct. Biol. 10, 541-544), although, the remainder of the structure differs. Significantly, the pattern of, disulfide cross-links observed in this material isolated from human plasma, is altogether different from the disulfides proposed for recombinant, forms. The NMR structure reveals the relative orientation of binding sites, for cell surface receptors, including an integrin-binding site at residues, 45-47, which was disordered and did not diffract in the co-crystal, and a, site for the urokinase receptor, which overlaps with the PAI-1-binding, site.
About this Structure
1S4G is a Single protein structure of sequence from Homo sapiens with as ligand. Full crystallographic information is available from OCA.
Reference
The solution structure of the N-terminal domain of human vitronectin: proximal sites that regulate fibrinolysis and cell migration., Mayasundari A, Whittemore NA, Serpersu EH, Peterson CB, J Biol Chem. 2004 Jul 9;279(28):29359-66. Epub 2004 Apr 30. PMID:15123712
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