Ribosomal protein L9
From Proteopedia
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=== RPL9 === | === RPL9 === | ||
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[[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – TtRPL10 in 50S subunit+RNA fragments - ''Thermus thermophilus''<br /> | [[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – TtRPL10 in 50S subunit+RNA fragments - ''Thermus thermophilus''<br /> | ||
| - | [[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47]], [[2v49]], [[1vsa]], [[2hgj]], [[2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]] - TtRPL10 in 50S subunit+5S RRNA+23S RRNA<br /> | + | [[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47]], [[2v49]], [[1vsa]], [[2hgj]], [[2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[3tve]], [[3tvh]], [[3uye]], [[3uyg]], [[3uz1]], [[3uz2]], [[3uz8]], [[3uz9]], [[3uzf]], [[3uzh]], [[3uzk]], [[3uzn]], [[4dha]], [[4dhc]] - TtRPL10 in 50S subunit+5S RRNA+23S RRNA<br /> |
[[3fin]] - TtRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | [[3fin]] - TtRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | ||
[[2wwq]] – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br /> | [[2wwq]] – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br /> | ||
| - | [[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3ofd]], [[3og0]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]], [[3r8s]], [[3r8t]] | + | [[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3ofd]], [[3og0]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]], [[3r8s]], [[3r8t]], [[3uxq]], [[3uxr]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA<br /> |
| - | [[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]], [[3izt]], [[3izu]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | + | [[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]], [[3izt]], [[3izu]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3j19]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> |
[[3kcr]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br /> | [[3kcr]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br /> | ||
[[3j01]] – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase – Cryo-EM<br /> | [[3j01]] – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase – Cryo-EM<br /> | ||
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[[3iy9]] – RPL9 in 50S subunit – ''Leishmania taretolae''<br /> | [[3iy9]] – RPL9 in 50S subunit – ''Leishmania taretolae''<br /> | ||
[[1nkw]] - DrRPL9 in 50S subunit+5S RRNA+23S RRNA - ''Deinococcus radiodurans'' | [[1nkw]] - DrRPL9 in 50S subunit+5S RRNA+23S RRNA - ''Deinococcus radiodurans'' | ||
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=== L9 in 50S subunit + antibiotics === | === L9 in 50S subunit + antibiotics === | ||
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[[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] – TtRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> | [[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] – TtRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> | ||
[[2qam]], [[2qao]], [[2qoz]], [[2qp1]], [[2qba]], [[2qbc]], [[3ofc]], [[3ofz]], [[3ofq]], [[3ofr]], [[1vt2]], [[3orb]], [[3oas]], [[3oat]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> | [[2qam]], [[2qao]], [[2qoz]], [[2qp1]], [[2qba]], [[2qbc]], [[3ofc]], [[3ofz]], [[3ofq]], [[3ofr]], [[1vt2]], [[3orb]], [[3oas]], [[3oat]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> | ||
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=== L9 in 60S subunit === | === L9 in 60S subunit === | ||
| - | [[3jyw]] - | + | [[3jyw]] - RPL9 in 60S subunit – ''Thermomyces lanuginosus'' – Cryo-EM<br /> |
| - | [[1s1i]] - | + | [[1s1i]] - yRPL9 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast<br /> |
| - | [[3o58]], [[3o5h]] - | + | [[3o58]], [[3o5h]] - yRPL9 in 60S ribosomal subunit+25S RRNA+5S RRNA+5.8S RRNA<br /> |
| + | [[3izs]] – yRPL9 in 60S ribosomal subunit – Cryo-EM<br /> | ||
| + | [[3u5e]], [[3u5i]] – yRPL9 in 60S ribosomal subunit<br /> | ||
[[3izr]] – RPL9 in 60S subunit – wheat – Cryo EM<br /> | [[3izr]] – RPL9 in 60S subunit – wheat – Cryo EM<br /> | ||
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=== L9 in large + small ribosomal subunit === | === L9 in large + small ribosomal subunit === | ||
| - | [[2zkr]] - | + | [[2zkr]] - RPL9 in 60S ribosomal subunit+30S ribosomal subunit+28S RRNA+5.8S RRNA – Cryo-EM – dog |
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===L9 in 50S subunit + ribosome releasing factor (RRF)=== | ===L9 in 50S subunit + ribosome releasing factor (RRF)=== | ||
[[2qbe]], [[2qbg]], [[2qbi]], [[2qbk]], [[2z4l]], [[2z4n]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+RRF | [[2qbe]], [[2qbg]], [[2qbi]], [[2qbk]], [[2z4l]], [[2z4n]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+RRF | ||
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===L9 in 50S subunit + various proteins=== | ===L9 in 50S subunit + various proteins=== | ||
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[[2vhm]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br /> | [[2vhm]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br /> | ||
[[2j28]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br /> | [[2j28]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br /> | ||
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===L9 in part of 50S subunit=== | ===L9 in part of 50S subunit=== | ||
Revision as of 10:52, 27 June 2012
Ribosomal protein L9 (RPL9) is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. The images at the left and at the right correspond to one representative RPL9, i.e. the crystal structure of Ribosomal protein L9 from Bacillus stearothermophilus (1div).
3D Structures of Ribosomal protein L9
Update June 2012
RPL9
1div – GsRPL9 – Geobacillus stearothermophilus
2hvf, 2hba – GsRPL9 N-terminal (mutant)
2hbb - GsRPL9 N-terminal
1cqu - GsRPL9 N-terminal - NMR
2cql - hRPL9 N-terminal - human
L9 in 50S subunit+RNA
2xg0, 2xg2, 3kir, 3kit, 3kiw, 3kiy – TtRPL10 in 50S subunit+RNA fragments - Thermus thermophilus
2x9s, 2x9u, 3kni, 3knk, 3knm, 3kno, 3hux, 3huz, 2wh2, 2wh4, 2wdi, 2wdj, 2wdl, 2wdn, 1vsp, 2v47, 2v49, 1vsa, 2hgj, 2hgq, 2hgu, 2j01, 2j03, 1yl3, 3mrz, 3ms1, 3i8f, 3i8i, 3i9c, 3i9e, 3f1f, 3f1h, 3d5b, 3d5d, 2b66, 2b9n, 2b9p, 1giy, 3pyo, 3pyr, 3pyt, 3pyv, 3tve, 3tvh, 3uye, 3uyg, 3uz1, 3uz2, 3uz8, 3uz9, 3uzf, 3uzh, 3uzk, 3uzn, 4dha, 4dhc - TtRPL10 in 50S subunit+5S RRNA+23S RRNA
3fin - TtRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
2wwq – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – Escherichia coli
3i1n, 3i1p, 3i1r, 3i1t, 3i20, 3i22, 3e1b, 3e1d, 3df2, 3df4, 2vhn, 2qov, 2qox, 2i2t, 2i2v, 1vs6, 1vs8, 2aw4, 2awb, 3ofd, 3og0, 1vor, 1vou, 1vow, 1voy, 1vp0, 1pnu, 1pny, 3r8s, 3r8t, 3uxq, 3uxr - EcRPL9 in 50S subunit+5S RRNA+23S RRNA
3fik, 2gya, 2gyc, 3bbx, 1p85, 1p86, 3izt, 3izu, 3j0t, 3j0w, 3j0y, 3j11, 3j12, 3j14, 3j19 - EcRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
3kcr - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase
3j01 – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase – Cryo-EM
2rdo - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
3bbo - RPL9 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach
3iy9 – RPL9 in 50S subunit – Leishmania taretolae
1nkw - DrRPL9 in 50S subunit+5S RRNA+23S RRNA - Deinococcus radiodurans
L9 in 50S subunit + antibiotics
1xbp, 1nwx, 1nwy, 1sm1 - DrRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic
3oh5, 3oh7, 3ohj, 3ohk, 3ohz, 3oi1, 3oi3, 3oi5 – TtRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic
2qam, 2qao, 2qoz, 2qp1, 2qba, 2qbc, 3ofc, 3ofz, 3ofq, 3ofr, 1vt2, 3orb, 3oas, 3oat - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic
L9 in 60S subunit
3jyw - RPL9 in 60S subunit – Thermomyces lanuginosus – Cryo-EM
1s1i - yRPL9 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast
3o58, 3o5h - yRPL9 in 60S ribosomal subunit+25S RRNA+5S RRNA+5.8S RRNA
3izs – yRPL9 in 60S ribosomal subunit – Cryo-EM
3u5e, 3u5i – yRPL9 in 60S ribosomal subunit
3izr – RPL9 in 60S subunit – wheat – Cryo EM
L9 in large + small ribosomal subunit
2zkr - RPL9 in 60S ribosomal subunit+30S ribosomal subunit+28S RRNA+5.8S RRNA – Cryo-EM – dog
L9 in 50S subunit + ribosome releasing factor (RRF)
2qbe, 2qbg, 2qbi, 2qbk, 2z4l, 2z4n - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+RRF
L9 in 50S subunit + various proteins
2vhm - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix
2j28 - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM
L9 in part of 50S subunit
487d – RPL9+RPL1+RPL2+RPL6+RPL11+RPL14+RPL25 – Cryo-EM
