Ribosomal protein S17

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Revision as of 10:30, 1 July 2012

Crystal Structure of Ribosomal protein S17 from 2zm6, chain Q

Ribosomal protein S17 (RPS17) is one of the 22 proteins which belong to the of the bacterial ribosome. It binds to the 5' end of 16S RRNA and may participate in the recognition of termination codons. The images at the left and at the right correspond to one representative RPS17, i.e. the crystal structure of Ribosomal protein S17 from Thermus thermophilus (2zm6, chain Q).

1 3D Structures of Ribosomal protein S17

3D Structures of Ribosomal protein S17

Update December 2011

S17

1rip – TtRPS17 – NMR - Geobacillus stearothermophilus
1rq6 – RPS17 - Methanothermobacter

S17 in small ribosomal subunit

2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus
2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3pyn, 3pyq, 3pys, 3pyu - TtRPS17 in 30S ribosomal subunit+16S RRNA+RNA fragment
3kc4 – EcRPS17 in 30S ribosomal subunit – Escherichia coli
3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofa, 3ofb, 3ofx, 3ofy, 3ofo, 3ofp, 3or9, 3ora - EcRPS17 in 30S ribosomal subunit+16S RRNA
1i94, 1fka - TtRPS17 in 30S ribosomal subunit+16S RRNA
1p87, 1p6g - EcRPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM
3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach

S17 in small + large ribosomal subunit

1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM

S17 in small ribosomal subunit+ chain release factor

3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA
3d5a, 3d5c - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
3zvo – TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3
2b64 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
2b9m - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
2x9r, 2x9t, 2wh1, 2wh3 - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA
3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA

S17 in small ribosomal subunit+tRNA+mRNA

2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
2hgp - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2i2p, 2i2u - EcRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2hgr - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
1yl4 – TtRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
1pns – EcRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA
1xnq, 1xnr - TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+A-site tRNA

2uxd, 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
1n32, 1n33 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
1n34 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
1xmo, 1xmq - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+P-site tRNA

3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
3i8h, 3i9b, 3i9d - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA
1ibk - TtRPS17 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
2wwl - EcRPS17 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli
3i1q - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA
3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA

S17 in small ribosomal subunit+A-site tRNA+P-site tRNA

1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+P-site tRNA+E-site tRNA

2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
2b9o - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA

S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA

2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM
1jgo, 1jgp, 1jgq, 1gix - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA

S17 in small ribosomal subunit + antibiotics

1i95, 1i97, 2hhh, 2f4v - TtRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic
1hnx, 1hnw, 1hnz, 1fjg – TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic
2qbb, 2qb9, 1vs5, 1vs7 , 2qan, 2qal, 2qou, 2qow, 2qoy, 2qp0, 2z4k, 2z4m, 3oaq, 3oar - EcRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic
2j00, 2j02 - TtRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA
2wdg, 2wdh, 2wdk, 2wdm - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin
3knj, 3knh - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin
3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin

S17 in small ribosomal subunit + ribosome recycling factor

2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor
3r8n, 3r8o – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA
2qbh, 2qbj - EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin
2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet

S17 in small ribosomal subunit + elongation factor

2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G
2wrn, 2wrq - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
3fic - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
3izv – EcRPS17 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU
3izw – EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU
2y0u, 2y0w, 2y0y, 2y12, 2y10, 2y18, 2y14, 2y16 – TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU
3fih - EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU
3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P

S17 in small ribosomal subunit + translation initiation factor

1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA
1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA

S17 in small ribosomal subunit + various proteins

3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA
1voq, 1vos, 1vov, 1vox, 1voz - EcRPS17 in 30S ribosomal subunit+protein Y+16S RRNA
2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA
3j00 – EcRPS17 + 16S RRNA + FTSQ + apolipoprotein A-I
2ykr – EcRPS17 + 16S RRNA + GMPPNP + GTPase RSGA
4a2i – EcRPS17 + 16S RRNA + GTPase RSGA – Cryo EM

S17 in small 40S ribosomal subunit + various proteins

2xzm, 2xzn – RPS17 in 40S ribosomal subunit+18S RRNA+RACK1 – Tetrahymena thermophila
3iz6 - RPS17 in 40S ribosomal subunit +RACK1+18S RRNA – wheat – Cryo-EM
3o2z, 3o30 - yRPS17 in 40S ribosomal subunit +RACK1

S17 in part of small ribosomal subunit

3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA
1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment

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Michal Harel, Alexander Berchansky, Jaime Prilusky

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	[[Image:RPS17.png\|left\|200px\|thumb\|Crystal Structure of Ribosomal protein S17 from [[2zm6]], chain Q]]		[[Image:RPS17.png\|left\|200px\|thumb\|Crystal Structure of Ribosomal protein S17 from [[2zm6]], chain Q]]
	{{STRUCTURE_2zm6\| PDB=2zm6 \| SIZE=400\| SCENE=Ribosomal_protein_S17/Cv/1 \|right\|CAPTION=Ribosomal protein S17 from [[2zm6]], chain Q }}		{{STRUCTURE_2zm6\| PDB=2zm6 \| SIZE=400\| SCENE=Ribosomal_protein_S17/Cv/1 \|right\|CAPTION=Ribosomal protein S17 from [[2zm6]], chain Q }}
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