This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1y3g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:48, 25 July 2012) (edit) (undo)
 
Line 1: Line 1:
{{Structure
{{Structure
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1y3g]], [[Resolution|resolution]] 2.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1y3g]], [[Resolution|resolution]] 2.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Ca+E+317'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Ca+E+318'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Ca+E+319'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Ca+E+320'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Zn+E+321'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Dms+E+801'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+Dms+E+802'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+3pl+E+803'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Amm+E+804'>AC9</scene> and <scene name='pdbsite=BC1:Binding+Site+For+Residue+LEU+E+805'>BC1</scene>
 
|LIGAND= <scene name='pdbligand=3PL:3-PHENYLPROPANAL'>3PL</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
|LIGAND= <scene name='pdbligand=3PL:3-PHENYLPROPANAL'>3PL</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Thermolysin Thermolysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.27 3.4.24.27] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Thermolysin Thermolysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.27 3.4.24.27] </span>
-
|NONSTDRES=<scene name='pdbligand=AMM:'>AMM</scene>
+
|NONSTDRES=<scene name='pdbligand=AMM:(2S)-2-{[(AMINOMETHYL)(DIHYDROXY)SILYL]METHYL}-4-METHYLPENTANAL'>AMM</scene>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3g OCA], [http://www.ebi.ac.uk/pdbsum/1y3g PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y3g RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3g OCA], [http://www.ebi.ac.uk/pdbsum/1y3g PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y3g RCSB]</span>
|FUNCTION={{GO|id=GO:0016787 | text = hydrolase activity}}{{GO|id=GO:0004222 | text = metalloendopeptidase activity}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}{{GO|id=GO:0005509 | text = calcium ion binding}}{{GO|id=GO:0008237 | text = metallopeptidase activity}}{{GO|id=GO:0008233 | text = peptidase activity}}
|FUNCTION={{GO|id=GO:0016787 | text = hydrolase activity}}{{GO|id=GO:0004222 | text = metalloendopeptidase activity}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}{{GO|id=GO:0005509 | text = calcium ion binding}}{{GO|id=GO:0008237 | text = metallopeptidase activity}}{{GO|id=GO:0008233 | text = peptidase activity}}

Current revision

Drag the structure with the mouse to rotate
1y3g, resolution 2.10Å ()
Ligands: , , ,
Non-Standard Residues:
Activity: Thermolysin, with EC number 3.4.24.27
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools