Template:STRUCTURE 3gpd

From Proteopedia

(Difference between revisions)

Current revision

Ligands:

Activity:

Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating), with EC number 1.2.1.12

Structural annotation:
Resources:	CATH : 3Gpdg02, 3Gpdg01, 3Gpdr01, 3Gpdr02 InterPro : Ipr000173, Ipr006424 Pfam : PF00044, PF02800 SCOP : d3gpdg1, d3gpdg2, d3gpdr1, d3gpdr2 UniProt : P04406

Functional annotation:
Cellular component:	cytoplasm
Biological process:	glycolysis glucose metabolic process
Molecular function:	glyceraldehyde-3-phosphate dehydrogenase activity oxidoreductase activity protein binding glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity NAD binding

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_3gpd"

@@ Line 1: / Line 1: @@
 {{Structure
 |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[3gpd]], [[Resolution|resolution]] 3.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-|SITE= <scene name='pdbsite=ABR:Residues+Interacting+w.+The+Adenine+Base+Of+Nad+Cofactor+...'>ABR</scene>, <scene name='pdbsite=AC1:Binding+Site+For+Residue+So4+R+338'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+So4+R+340'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+So4+G+338'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+So4+G+340'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Nad+R+336'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Nad+G+336'>AC6</scene>, <scene name='pdbsite=APR:Residues+Interacting+w.+The+Phosphate+Of+A+Nucleotide+Of+...'>APR</scene>, <scene name='pdbsite=ARR:Residues+Interacting+w.+The+A+Ribose+Of+Nad+Cofactor+In+...'>ARR</scene>, <scene name='pdbsite=IPR:Residues+Interacting+w.+The+Substrate+And+The+Inorganic+...'>IPR</scene>, <scene name='pdbsite=NBR:Residues+Interacting+w.+The+Nicotinamide+Base+Of+Nad+Cof+...'>NBR</scene>, <scene name='pdbsite=NPR:Residues+Interacting+w.+The+Phosphate+Of+Nicotinamide+Nu+...'>NPR</scene>, <scene name='pdbsite=NRR:Residues+Interacting+w.+The+Ribose+Of+Nicotinamide+Nucle+...'>NRR</scene> and <scene name='pdbsite=SPR:Residues+Interacting+w.+The+Substrate+And+The+Inorganic+...'>SPR</scene>
 |LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glyceraldehyde-3-phosphate_dehydrogenase_(phosphorylating) Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.12 1.2.1.12] </span>
@@ Line 9: / Line 8: @@
 |COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdG02 3Gpdg02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdG01 3Gpdg01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdR01 3Gpdr01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=3gpdR02 3Gpdr02]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000173 Ipr000173], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006424 Ipr006424]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00044 PF00044], [http://pfam.sanger.ac.uk/family?acc=PF02800 PF02800]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30029 d3gpdg1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=39944 d3gpdg2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30028 d3gpdr1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=39943 d3gpdr2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P04406 P04406]</span>
-|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=GAPDH GAPDH]</span>
 |uPDB=3GPD|CONSURF={{!}}-
 {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
@@ Line 19: / Line 17: @@
 <jmolButton>
 <script></script>
-<text>A [x]</text>
+<text>R [x]</text>
-<name>jmb_3gpd_A</name>
+<name>jmb_3gpd_R</name>
-<title>toggle chain A</title>
+<title>toggle chain R</title>
 <jsscript>ConsurfChainButton(elementClicked)</jsscript>
 <appendtargetsuffixtoid>true</appendtargetsuffixtoid>
@@ Line 29: / Line 27: @@
 <jmolButton>
 <script></script>
-<text>C [x]</text>
+<text>G [x]</text>
-<name>jmb_3gpd_C</name>
+<name>jmb_3gpd_G</name>
-<title>toggle chain C</title>
+<title>toggle chain G</title>
 <jsscript>ConsurfChainButton(elementClicked)</jsscript>
 <appendtargetsuffixtoid>true</appendtargetsuffixtoid>

Template:STRUCTURE 3gpd

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