1f7l
From Proteopedia
(New page: 200px<br /><applet load="1f7l" size="450" color="white" frame="true" align="right" spinBox="true" caption="1f7l, resolution 1.5Å" /> '''HOLO-(ACYL CARRIER PR...) |
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| - | [[Image:1f7l.jpg|left|200px]]<br /><applet load="1f7l" size=" | + | [[Image:1f7l.jpg|left|200px]]<br /><applet load="1f7l" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1f7l, resolution 1.5Å" /> | caption="1f7l, resolution 1.5Å" /> | ||
'''HOLO-(ACYL CARRIER PROTEIN) SYNTHASE IN COMPLEX WITH COENZYME A AT 1.5A'''<br /> | '''HOLO-(ACYL CARRIER PROTEIN) SYNTHASE IN COMPLEX WITH COENZYME A AT 1.5A'''<br /> | ||
==Overview== | ==Overview== | ||
| - | BACKGROUND: Holo-(acyl carrier protein) synthase (AcpS), a member of the | + | BACKGROUND: Holo-(acyl carrier protein) synthase (AcpS), a member of the phosphopantetheinyl transferase superfamily, plays a crucial role in the functional activation of acyl carrier protein (ACP) in the fatty acid biosynthesis pathway. AcpS catalyzes the attachment of the 4'-phosphopantetheinyl moiety of coenzyme A (CoA) to the sidechain of a conserved serine residue on apo-ACP. RESULTS: We describe here the first crystal structure of a type II ACP from Bacillus subtilis in complex with its activator AcpS at 2.3 A. We also have determined the structures of AcpS alone (at 1.8 A) and AcpS in complex with CoA (at 1.5 A). These structures reveal that AcpS exists as a trimer. A catalytic center is located at each of the solvent-exposed interfaces between AcpS molecules. Site-directed mutagenesis studies confirm the importance of trimer formation in AcpS activity. CONCLUSIONS: The active site in AcpS is only formed when two AcpS molecules dimerize. The addition of a third molecule allows for the formation of two additional active sites and also permits a large hydrophobic surface from each molecule of AcpS to be buried in the trimer. The mutations Ile5-->Arg, Gln113-->Glu and Gln113-->Arg show that AcpS is inactive when unable to form a trimer. The co-crystal structures of AcpS-CoA and AcpS-ACP allow us to propose a catalytic mechanism for this class of 4'-phosphopantetheinyl transferases. |
==About this Structure== | ==About this Structure== | ||
| - | 1F7L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with CA, CL and COA as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Holo-[acyl-carrier-protein]_synthase Holo-[acyl-carrier-protein] synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.8.7 2.7.8.7] Full crystallographic information is available from [http:// | + | 1F7L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=COA:'>COA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Holo-[acyl-carrier-protein]_synthase Holo-[acyl-carrier-protein] synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.8.7 2.7.8.7] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F7L OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Holo-[acyl-carrier-protein] synthase]] | [[Category: Holo-[acyl-carrier-protein] synthase]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| - | [[Category: Fritz, C | + | [[Category: Fritz, C C.]] |
[[Category: Hixon, J.]] | [[Category: Hixon, J.]] | ||
[[Category: Lin, L.]] | [[Category: Lin, L.]] | ||
[[Category: Mathew, R.]] | [[Category: Mathew, R.]] | ||
| - | [[Category: Parris, K | + | [[Category: Parris, K D.]] |
[[Category: Seehra, J.]] | [[Category: Seehra, J.]] | ||
| - | [[Category: Somers, W | + | [[Category: Somers, W S.]] |
[[Category: Stahl, M.]] | [[Category: Stahl, M.]] | ||
[[Category: Tam, A.]] | [[Category: Tam, A.]] | ||
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[[Category: coenzyme a complex]] | [[Category: coenzyme a complex]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:35:44 2008'' |
Revision as of 10:35, 21 February 2008
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HOLO-(ACYL CARRIER PROTEIN) SYNTHASE IN COMPLEX WITH COENZYME A AT 1.5A
Overview
BACKGROUND: Holo-(acyl carrier protein) synthase (AcpS), a member of the phosphopantetheinyl transferase superfamily, plays a crucial role in the functional activation of acyl carrier protein (ACP) in the fatty acid biosynthesis pathway. AcpS catalyzes the attachment of the 4'-phosphopantetheinyl moiety of coenzyme A (CoA) to the sidechain of a conserved serine residue on apo-ACP. RESULTS: We describe here the first crystal structure of a type II ACP from Bacillus subtilis in complex with its activator AcpS at 2.3 A. We also have determined the structures of AcpS alone (at 1.8 A) and AcpS in complex with CoA (at 1.5 A). These structures reveal that AcpS exists as a trimer. A catalytic center is located at each of the solvent-exposed interfaces between AcpS molecules. Site-directed mutagenesis studies confirm the importance of trimer formation in AcpS activity. CONCLUSIONS: The active site in AcpS is only formed when two AcpS molecules dimerize. The addition of a third molecule allows for the formation of two additional active sites and also permits a large hydrophobic surface from each molecule of AcpS to be buried in the trimer. The mutations Ile5-->Arg, Gln113-->Glu and Gln113-->Arg show that AcpS is inactive when unable to form a trimer. The co-crystal structures of AcpS-CoA and AcpS-ACP allow us to propose a catalytic mechanism for this class of 4'-phosphopantetheinyl transferases.
About this Structure
1F7L is a Single protein structure of sequence from Bacillus subtilis with , and as ligands. Active as [acyl-carrier-protein_synthase Holo-[acyl-carrier-protein] synthase], with EC number 2.7.8.7 Full crystallographic information is available from OCA.
Reference
Crystal structures of substrate binding to Bacillus subtilis holo-(acyl carrier protein) synthase reveal a novel trimeric arrangement of molecules resulting in three active sites., Parris KD, Lin L, Tam A, Mathew R, Hixon J, Stahl M, Fritz CC, Seehra J, Somers WS, Structure. 2000 Aug 15;8(8):883-95. PMID:10997907[[Category: Holo-[acyl-carrier-protein] synthase]]
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