JMS/sandbox4
From Proteopedia
(Difference between revisions)
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dCAII has the <scene name='JMS/sandbox4/Ca/3'>general structure of CA</scene>, such as: | dCAII has the <scene name='JMS/sandbox4/Ca/3'>general structure of CA</scene>, such as: | ||
| - | <font color='orange'><b>two prominent alpha helixes</b></font> | + | <font color='orange'><b>two prominent alpha helixes</b></font> (here, the two ''longest'' helixes) |
| + | <font color='green'><b>10 beta sheets</b></font> | ||
| + | <span style="color:yellow;background-color:black;font-weight:bold;">catalytic zinc</span> | ||
| - | <font color='green'><b>10 beta sheets</b></font>green: 10 beta sheets | ||
| - | |||
| - | <span style="color:yellow;background-color:black;font-weight:bold;">catalytic zinc | ||
| - | </span>yellow: catalytic zinc | ||
dCAII has, too, the CA's <scene name='JMS/sandbox4/Active/2'>active site</scene> architectural elements. | dCAII has, too, the CA's <scene name='JMS/sandbox4/Active/2'>active site</scene> architectural elements. | ||
| - | <span style="color:pink;background-color:black;font-weight:bold;">Catalytic zinc coordinating residues | + | <span style="color:pink;background-color:black;font-weight:bold;">Catalytic zinc coordinating residues</span> |
| - | </span> | + | <font color='red'><b>substrate binding</b></font> |
| + | <font color='purple'><b>hydrogen binding</b></font> | ||
| + | <font color='#20d0f0'><b>lacetate</b></font> | ||
| - | <font color='red'><b>substrate binding</b></font>: substrate binding | ||
| - | <font color=' | + | In the following <scene name='1y7w/Com_view/8'>conserved region illustration</scene> of the carbonic anhydrase from ''Dunaliella salina'' (dCA II) structure. The regions corresponding to conserved regions <font color='blue'><b>(CRs, blue)</b></font>, variable regions <font color='lime'><b>(VRs, lime)</b></font>, and variable conserved regions <font color='red'><b>(VCRs, red)</b></font>, are positioned on the dCA II structure. The catalytic Zn<sup>2+</sup>, insertions and deletions in VCRs including L1 (the Zn binding loop), L4 (the Na-binding loop), L5, and two extended α-helices (E and G) are marked. N and C termini are labeled. |
| - | <font color='#20d0f0'><b>lacetate</b></font>light-blue:acetate = | ||
| - | + | Still, dCAII has a decidedly unusual ability to function in extremely high salt concentrations, but, also, in low salt concentrations.This balance comes from a predominantly <scene name='JMS/sandbox4/Surface/2'> negative surface</scene> negative surface, on the one hand, that is still less negative than that observed in halophiles, on the other hand. Therein lies the difference between Halo''phile'' and Halo''tolerant''. | |
| - | Still, dCAII has a decidedly unusual ability to function in extremely high salt concentrations, but, also, in low salt concentrations.This balance comes from a predominantly <scene name='JMS/sandbox4/Surface/2'> negative surface</scene> negative surface, on the one hand, that is still less negative than that observed in halophiles, on the other hand. Therein lies the difference between Halo''phile'' and Halo''tolerant''. | ||
In summary, dCAII has all the properties of CA, and strikes the balance between positive and negative surface residues, which leads to ''tolerance'' of extremely salty conditions, and an ability to function in low salt conditions, as well. | In summary, dCAII has all the properties of CA, and strikes the balance between positive and negative surface residues, which leads to ''tolerance'' of extremely salty conditions, and an ability to function in low salt conditions, as well. | ||
</StructureSection> | </StructureSection> | ||
<references/> | <references/> | ||
Revision as of 11:27, 9 August 2012
The Halotolerant Carbonic Anhydrase
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- ↑ Premkumar L, Greenblatt HM, Bageshwar UK, Savchenko T, Gokhman I, Sussman JL, Zamir A. Three-dimensional structure of a halotolerant algal carbonic anhydrase predicts halotolerance of a mammalian homolog. Proc Natl Acad Sci U S A. 2005 May 24;102(21):7493-8. Epub 2005 May 13. PMID:15894606 doi:0502829102
