1iz2
From Proteopedia
(New page: 200px<br /> <applet load="1iz2" size="450" color="white" frame="true" align="right" spinBox="true" caption="1iz2, resolution 2.20Å" /> '''Interactions causin...) |
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| - | [[Image:1iz2.gif|left|200px]]<br /> | + | [[Image:1iz2.gif|left|200px]]<br /><applet load="1iz2" size="350" color="white" frame="true" align="right" spinBox="true" |
| - | <applet load="1iz2" size=" | + | |
caption="1iz2, resolution 2.20Å" /> | caption="1iz2, resolution 2.20Å" /> | ||
'''Interactions causing the kinetic trap in serpin protein folding'''<br /> | '''Interactions causing the kinetic trap in serpin protein folding'''<br /> | ||
==Overview== | ==Overview== | ||
| - | Conformational transition is fundamental to the mechanism of functional | + | Conformational transition is fundamental to the mechanism of functional regulation in proteins, and serpins (serine protease inhibitors) can provide insight into this process. Serpins are metastable in their native forms, and they ordinarily undergo conformational transition to a stable state only when they form a tight complex with target proteases. The metastable native form is thus considered to be a kinetically trapped folding intermediate. We sought to understand the nature of the serpin kinetic trap as a step toward discovering how conformational transition is regulated. We found that mutations of the B/C beta-barrel of native alpha(1)-antitrypsin, a prototypical serpin, allowed conversion of the molecule into a more stable state. A 2.2 A resolution crystal structure of the stable form (PDB code, ) showed that the reactive site loop is inserted into an A beta-sheet, as in the latent plasminogen activator inhibitor-1. Mutational analyses suggest strongly that interactions not found in the final stable form cause the kinetic trap in serpin protein folding. |
==Disease== | ==Disease== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1IZ2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with SUM as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http:// | + | 1IZ2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=SUM:'>SUM</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ2 OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| - | [[Category: Hwang, K | + | [[Category: Hwang, K Y.]] |
[[Category: Im, H.]] | [[Category: Im, H.]] | ||
| - | [[Category: Woo, M | + | [[Category: Woo, M S.]] |
| - | [[Category: Yu, M | + | [[Category: Yu, M H.]] |
[[Category: SUM]] | [[Category: SUM]] | ||
[[Category: antitrypsin]] | [[Category: antitrypsin]] | ||
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[[Category: serpin]] | [[Category: serpin]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:17:14 2008'' |
Revision as of 11:17, 21 February 2008
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Interactions causing the kinetic trap in serpin protein folding
Contents |
Overview
Conformational transition is fundamental to the mechanism of functional regulation in proteins, and serpins (serine protease inhibitors) can provide insight into this process. Serpins are metastable in their native forms, and they ordinarily undergo conformational transition to a stable state only when they form a tight complex with target proteases. The metastable native form is thus considered to be a kinetically trapped folding intermediate. We sought to understand the nature of the serpin kinetic trap as a step toward discovering how conformational transition is regulated. We found that mutations of the B/C beta-barrel of native alpha(1)-antitrypsin, a prototypical serpin, allowed conversion of the molecule into a more stable state. A 2.2 A resolution crystal structure of the stable form (PDB code, ) showed that the reactive site loop is inserted into an A beta-sheet, as in the latent plasminogen activator inhibitor-1. Mutational analyses suggest strongly that interactions not found in the final stable form cause the kinetic trap in serpin protein folding.
Disease
Known diseases associated with this structure: Emphysema OMIM:[107400], Emphysema-cirrhosis OMIM:[107400], Hemorrhagic diathesis due to antithrombin Pittsburgh OMIM:[107400], Pulmonary disease, chronic obstructive, susceptibility to OMIM:[107400]
About this Structure
1IZ2 is a Single protein structure of sequence from Homo sapiens with as ligand. Full crystallographic information is available from OCA.
Reference
Interactions causing the kinetic trap in serpin protein folding., Im H, Woo MS, Hwang KY, Yu MH, J Biol Chem. 2002 Nov 29;277(48):46347-54. Epub 2002 Sep 18. PMID:12244055
Page seeded by OCA on Thu Feb 21 13:17:14 2008
Categories: Homo sapiens | Single protein | Hwang, K Y. | Im, H. | Woo, M S. | Yu, M H. | SUM | Antitrypsin | Folding | Serpin
