Journal:JBSD:13
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<b>Molecular Tour</b><br> | <b>Molecular Tour</b><br> | ||
- | The L166P mutation of <scene name='Journal:JBSD:13/Cv/ | + | The L166P mutation of <scene name='Journal:JBSD:13/Cv/12'>DJ1</scene> prevents the formation of a <scene name='Journal:JBSD:13/Cv/4'>functional DJ1 dimer</scene> and is linked to early-onset Parkinson’s disease (PD). Studies have shown that the chaperon modulator, BCL2-associated athanogene (BAG1) can repair DJ1 mutant thereby restoring its dimer forming function. Molecular simulation techniques were used to elucidate mechanisms underlying the repair of DJ1 L166P by BAG1. |
- | Due to the lack of BAG1 crystal structures, a <scene name='Journal:JBSD:13/Cv/5'>modeled BAG1 structure</scene> was built with I-TASSER using the UniProt peptide sequence (ID: Q99933). The DJ1 L166P mutant model was built and energetically minimized using Build Mutants from Discovery Studio 2.5 (DS 2.5; Accelrys Inc., San Diego, CA), with reference to DJ1 monomer (PDB: [[1pdv]]). A dock-based dimerization simulation showed that <scene name='Journal:JBSD:13/Cv/7'>interaction between mutant DJ1 and BAG1 at pose 2</scene> (<font color='darkmagenta'><b>BAG1 is colored darkmagenta</b></font>, <span style="color:lime;background-color:black;font-weight:bold;">DJ1 is in green</span>; <span style="color:white;background-color:black;font-weight:bold;">white surfaces represent interaction regions on BAG-1</span> and <span style="color:cyan;background-color:black;font-weight:bold;">cyan surfaces represent interaction regions on DJ1</span>) restored disrupted <scene name='Journal:JBSD:13/Cv/8'>alpha helix structures and H-bonds stabilizing the functional site Cys106</scene> ({{Template:ColorKey_Helix}},{{Template:ColorKey_Strand}},{{Template:ColorKey_Turn}}). The <scene name='Journal:JBSD:13/Cv/10'>His126-Pro184 H-bond</scene> critical to maintaining dimer interfaces was also restored and led to the restoration of dimer formation. | + | Due to the lack of BAG1 crystal structures, a <scene name='Journal:JBSD:13/Cv/5'>modeled BAG1 structure</scene> was built with I-TASSER using the UniProt peptide sequence (ID: Q99933). The DJ1 L166P mutant model was built and energetically minimized using Build Mutants from Discovery Studio 2.5 (DS 2.5; Accelrys Inc., San Diego, CA), with reference to DJ1 monomer (PDB: [[1pdv]]). A dock-based dimerization simulation showed that <scene name='Journal:JBSD:13/Cv/7'>interaction between mutant DJ1 and BAG1 at pose 2</scene> (<font color='darkmagenta'><b>BAG1 is colored darkmagenta</b></font>, <span style="color:lime;background-color:black;font-weight:bold;">DJ1 is in green</span>; <span style="color:white;background-color:black;font-weight:bold;">white surfaces represent interaction regions on BAG-1</span> and <span style="color:cyan;background-color:black;font-weight:bold;">cyan surfaces represent interaction regions on DJ1</span>) restored disrupted <scene name='Journal:JBSD:13/Cv/8'>alpha helix structures and H-bonds stabilizing the functional site Cys106</scene> ({{Template:ColorKey_Helix}}, {{Template:ColorKey_Strand}}, {{Template:ColorKey_Turn}}). The <scene name='Journal:JBSD:13/Cv/10'>His126-Pro184 H-bond</scene> critical to maintaining dimer interfaces was also restored and led to the restoration of dimer formation. |
<span style="color:yellow;background-color:black;font-weight:bold;">Wild-type DJ1 monomer is colored yellow</span>, <span style="color:lime;background-color:black;font-weight:bold;">mutant L166P DJ1 monomer repaired by BAG-1 at pose 2 is in green</span>, <font color='magenta'><b>monomer A</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">monomer B</span> of DJ1 dimer crystal structure (PDB: [[2r1t]]) are colored <font color='magenta'><b>magenta</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">salmon</span>, respectively. | <span style="color:yellow;background-color:black;font-weight:bold;">Wild-type DJ1 monomer is colored yellow</span>, <span style="color:lime;background-color:black;font-weight:bold;">mutant L166P DJ1 monomer repaired by BAG-1 at pose 2 is in green</span>, <font color='magenta'><b>monomer A</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">monomer B</span> of DJ1 dimer crystal structure (PDB: [[2r1t]]) are colored <font color='magenta'><b>magenta</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">salmon</span>, respectively. | ||
RMSD comparisons indicated that <scene name='Journal:JBSD:13/Cv/11'>Pose 2-DJ1 dimer was extremely similar to that of the crystal DJ1 dimer structure</scene> (PDB: [[2r1t]]) with an RMSD of 0.74 Å. The insights into the molecular functions of BAG1 might be applied to further the search for an effective Parkinson’s disease treatment. | RMSD comparisons indicated that <scene name='Journal:JBSD:13/Cv/11'>Pose 2-DJ1 dimer was extremely similar to that of the crystal DJ1 dimer structure</scene> (PDB: [[2r1t]]) with an RMSD of 0.74 Å. The insights into the molecular functions of BAG1 might be applied to further the search for an effective Parkinson’s disease treatment. |
Revision as of 10:42, 30 August 2012
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- ↑ Chen CY. Mechanism of BAG1 repair on Parkinson's disease-linked DJ1 mutation. J Biomol Struct Dyn. 2012 May;30(1):1-12. PMID:22571429 doi:10.1080/07391102.2012.674182
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