Journal:JBSD:13

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<b>Molecular Tour</b><br>
<b>Molecular Tour</b><br>
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The L166P mutation of <scene name='Journal:JBSD:13/Cv/2'>DJ1</scene> prevents the formation of a <scene name='Journal:JBSD:13/Cv/4'>functional DJ1 dimer</scene> and is linked to early-onset Parkinson’s disease (PD). Studies have shown that the chaperon modulator, BCL2-associated athanogene (BAG1) can repair DJ1 mutant thereby restoring its dimer forming function. Molecular simulation techniques were used to elucidate mechanisms underlying the repair of DJ1 L166P by BAG1.
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The L166P mutation of <scene name='Journal:JBSD:13/Cv/12'>DJ1</scene> prevents the formation of a <scene name='Journal:JBSD:13/Cv/4'>functional DJ1 dimer</scene> and is linked to early-onset Parkinson’s disease (PD). Studies have shown that the chaperon modulator, BCL2-associated athanogene (BAG1) can repair DJ1 mutant thereby restoring its dimer forming function. Molecular simulation techniques were used to elucidate mechanisms underlying the repair of DJ1 L166P by BAG1.
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Due to the lack of BAG1 crystal structures, a <scene name='Journal:JBSD:13/Cv/5'>modeled BAG1 structure</scene> was built with I-TASSER using the UniProt peptide sequence (ID: Q99933). The DJ1 L166P mutant model was built and energetically minimized using Build Mutants from Discovery Studio 2.5 (DS 2.5; Accelrys Inc., San Diego, CA), with reference to DJ1 monomer (PDB: [[1pdv]]). A dock-based dimerization simulation showed that <scene name='Journal:JBSD:13/Cv/7'>interaction between mutant DJ1 and BAG1 at pose 2</scene> (<font color='darkmagenta'><b>BAG1 is colored darkmagenta</b></font>, <span style="color:lime;background-color:black;font-weight:bold;">DJ1 is in green</span>; <span style="color:white;background-color:black;font-weight:bold;">white surfaces represent interaction regions on BAG-1</span> and <span style="color:cyan;background-color:black;font-weight:bold;">cyan surfaces represent interaction regions on DJ1</span>) restored disrupted <scene name='Journal:JBSD:13/Cv/8'>alpha helix structures and H-bonds stabilizing the functional site Cys106</scene> ({{Template:ColorKey_Helix}},{{Template:ColorKey_Strand}},{{Template:ColorKey_Turn}}). The <scene name='Journal:JBSD:13/Cv/10'>His126-Pro184 H-bond</scene> critical to maintaining dimer interfaces was also restored and led to the restoration of dimer formation.
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Due to the lack of BAG1 crystal structures, a <scene name='Journal:JBSD:13/Cv/5'>modeled BAG1 structure</scene> was built with I-TASSER using the UniProt peptide sequence (ID: Q99933). The DJ1 L166P mutant model was built and energetically minimized using Build Mutants from Discovery Studio 2.5 (DS 2.5; Accelrys Inc., San Diego, CA), with reference to DJ1 monomer (PDB: [[1pdv]]). A dock-based dimerization simulation showed that <scene name='Journal:JBSD:13/Cv/7'>interaction between mutant DJ1 and BAG1 at pose 2</scene> (<font color='darkmagenta'><b>BAG1 is colored darkmagenta</b></font>, <span style="color:lime;background-color:black;font-weight:bold;">DJ1 is in green</span>; <span style="color:white;background-color:black;font-weight:bold;">white surfaces represent interaction regions on BAG-1</span> and <span style="color:cyan;background-color:black;font-weight:bold;">cyan surfaces represent interaction regions on DJ1</span>) restored disrupted <scene name='Journal:JBSD:13/Cv/8'>alpha helix structures and H-bonds stabilizing the functional site Cys106</scene> ({{Template:ColorKey_Helix}}, {{Template:ColorKey_Strand}}, {{Template:ColorKey_Turn}}). The <scene name='Journal:JBSD:13/Cv/10'>His126-Pro184 H-bond</scene> critical to maintaining dimer interfaces was also restored and led to the restoration of dimer formation.
<span style="color:yellow;background-color:black;font-weight:bold;">Wild-type DJ1 monomer is colored yellow</span>, <span style="color:lime;background-color:black;font-weight:bold;">mutant L166P DJ1 monomer repaired by BAG-1 at pose 2 is in green</span>, <font color='magenta'><b>monomer A</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">monomer B</span> of DJ1 dimer crystal structure (PDB: [[2r1t]]) are colored <font color='magenta'><b>magenta</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">salmon</span>, respectively.
<span style="color:yellow;background-color:black;font-weight:bold;">Wild-type DJ1 monomer is colored yellow</span>, <span style="color:lime;background-color:black;font-weight:bold;">mutant L166P DJ1 monomer repaired by BAG-1 at pose 2 is in green</span>, <font color='magenta'><b>monomer A</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">monomer B</span> of DJ1 dimer crystal structure (PDB: [[2r1t]]) are colored <font color='magenta'><b>magenta</b></font> and <span style="color:salmon;background-color:black;font-weight:bold;">salmon</span>, respectively.
RMSD comparisons indicated that <scene name='Journal:JBSD:13/Cv/11'>Pose 2-DJ1 dimer was extremely similar to that of the crystal DJ1 dimer structure</scene> (PDB: [[2r1t]]) with an RMSD of 0.74 Å. The insights into the molecular functions of BAG1 might be applied to further the search for an effective Parkinson’s disease treatment.
RMSD comparisons indicated that <scene name='Journal:JBSD:13/Cv/11'>Pose 2-DJ1 dimer was extremely similar to that of the crystal DJ1 dimer structure</scene> (PDB: [[2r1t]]) with an RMSD of 0.74 Å. The insights into the molecular functions of BAG1 might be applied to further the search for an effective Parkinson’s disease treatment.

Revision as of 10:42, 30 August 2012

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  1. Chen CY. Mechanism of BAG1 repair on Parkinson's disease-linked DJ1 mutation. J Biomol Struct Dyn. 2012 May;30(1):1-12. PMID:22571429 doi:10.1080/07391102.2012.674182

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