JMS/sandbox4

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Current revision (12:31, 4 September 2012) (edit) (undo)
 
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<StructureSection load='1Y7W' size='350' side='right' caption='Structure of alpha-type carbonic anhydrase (dCAII) (PDB entry [[1Y7W]])' scene='JMS/sandbox4/Ca/3'>
<StructureSection load='1Y7W' size='350' side='right' caption='Structure of alpha-type carbonic anhydrase (dCAII) (PDB entry [[1Y7W]])' scene='JMS/sandbox4/Ca/3'>
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The halotolerant carbonic anhydrase (dCAII) looks like other carbonic anhydrases, showing high structural similarity. But looks aside, dCAII has an unusual ability to weather extreme environments.<ref>PMID:15894606</ref>
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The halotolerant carbonic anhydrase (dCAII) looks like other carbonic anhydrases (CA), showing high structural similarity. But looks aside, dCAII has an unusual ability to weather extreme environments.<ref>PMID:15894606</ref>
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Carbonic anhydrases are enzymes which catalyze the interconversion of CO2 and water to bicarbonate and proton. For full entry on γ-carbonic anhydrase see [[Gamma Carbonic Anhydrase]].
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Carbonic anhydrases are enzymes which catalyze the interconversion of CO2 and water to bicarbonate and proton. For a complementary entry on carbonic anhydrases, and specifically γ-carbonic anhydrase, the class which included dCAII, see [[Gamma Carbonic Anhydrase]].
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dCAII has the <scene name='JMS/sandbox4/Ca/3'>general structure of CA</scene>, such as:
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dCAII has a decidedly unusual ability to function both in extremely high salt concentrations, and, also, in low salt concentrations.This dual nature results from dCAII well-calibrated amount of negative surface. The <scene name='JMS/sandbox4/Surface/2'> negative surface</scene> prevents misfolding in highly salty environments. But the surface is not so negative that dCAII requires lots of salt to function. Meaning, dCAII is rather negative, but not as negative as halophiles. Therein lies the difference between Halo''phile'' and Halo''tolerant''.
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Despite dCAII's unusual chemical properties, dCAII has the <scene name='JMS/sandbox4/Ca/3'>general structure of CA</scene>, such as:
<font color='orange'><b>two prominent alpha helixes</b></font> (here, the two ''longest'' helixes)
<font color='orange'><b>two prominent alpha helixes</b></font> (here, the two ''longest'' helixes)
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In the following <scene name='1y7w/Com_view/8'>conserved region illustration</scene> of the carbonic anhydrase from ''Dunaliella salina'' (dCA II) structure. The regions corresponding to conserved regions <font color='blue'><b>(CRs, blue)</b></font>, variable regions <font color='lime'><b>(VRs, lime)</b></font>, and variable conserved regions <font color='red'><b>(VCRs, red)</b></font>, are positioned on the dCA II structure. The catalytic Zn<sup>2+</sup>, insertions and deletions in VCRs including L1 (the Zn binding loop), L4 (the Na-binding loop), L5, and two extended α-helices (E and G) are marked. N and C termini are labeled.
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In the following <scene name='1y7w/Com_view/8'>conserved region illustration</scene> of the carbonic anhydrase from ''Dunaliella salina'' (dCAII) structure. The regions corresponding to conserved regions <font color='blue'><b>(CRs, blue)</b></font>, variable regions <font color='lime'><b>(VRs, lime)</b></font>, and variable conserved regions <font color='red'><b>(VCRs, red)</b></font>, are positioned on the dCA II structure. The catalytic Zn<sup>2+</sup>, insertions and deletions in VCRs including L1 (the Zn binding loop), L4 (the Na-binding loop), L5, and two extended α-helices (E and G) are marked. N and C termini are labeled.
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Still, dCAII has a decidedly unusual ability to function in extremely high salt concentrations, but, also, in low salt concentrations.This balance comes from a predominantly <scene name='JMS/sandbox4/Surface/2'> negative surface</scene> negative surface, on the one hand, that is still less negative than that observed in halophiles, on the other hand. Therein lies the difference between Halo''phile'' and Halo''tolerant''.
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In summary, dCAII has all the properties of CA, and strikes the balance between positive and negative surface residues, which leads to ''tolerance'' of extremely salty conditions, and an ability to function in low salt conditions, as well.
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In summary, dCAII has shares structural properties of CA, yet still manages to strike the balance between positive and negative surface residues, which leads to ''tolerance'' of extremely salty conditions.
</StructureSection>
</StructureSection>
<references/>
<references/>

Current revision

The Halotolerant Carbonic Anhydrase

Structure of alpha-type carbonic anhydrase (dCAII) (PDB entry 1Y7W)

Drag the structure with the mouse to rotate
  1. Premkumar L, Greenblatt HM, Bageshwar UK, Savchenko T, Gokhman I, Sussman JL, Zamir A. Three-dimensional structure of a halotolerant algal carbonic anhydrase predicts halotolerance of a mammalian homolog. Proc Natl Acad Sci U S A. 2005 May 24;102(21):7493-8. Epub 2005 May 13. PMID:15894606 doi:0502829102

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