Sandbox reserved CDK2 Oxindole Inhibitor

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== Cyclin-Dependend Kinase 2 (CDK2) in Complex with an Oxindole Inhibitor ==
== Cyclin-Dependend Kinase 2 (CDK2) in Complex with an Oxindole Inhibitor ==
<StructureSection load='1fvt' size='350' side='left' caption='Structure of CDK2 with 4-(5-bromo-2-oxo-2h-indol-3-ylazo)-benzenesulfonamide (PDB entry [[1fvt]])' scene=''>
<StructureSection load='1fvt' size='350' side='left' caption='Structure of CDK2 with 4-(5-bromo-2-oxo-2h-indol-3-ylazo)-benzenesulfonamide (PDB entry [[1fvt]])' scene=''>
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*The representation displayed is that of cyclin-dependent kinase 2 (CDK2) interacting with an oxindole inhibitor. The ligand pictured is the <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Oxindole_inhibitor/2'>oxindole inhibitor</scene>, 4-(5-bromo-2-oxo-2h-indol-3-ylazo)- benzenesulfonamide. <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Cdk2/1'>CDK2</scene> is part of the Ser/Thr protein kinases. CDK2 is a positive regulator of the eukaryotic cell cycle progression and is a catalytic unit that helps the cell progress from the G1 phase to the S phase. <ref>[http://www.ncbi.nlm.nih.gov/gene/1017]</ref>
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*Many patients are placed on chemotherapy for the treatment of cancer. One of the concerns with these patients is the chemotherapy-induced alopecia (CIA). Alopecia, or hair loss, is an esthetic concern to patients and can be emotionally devastating. Researchers have been investigating ways in which to inhibit alopecia. A possible way is through the inhibition of CDK2.
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*Chemotherapy agents that cause CIA attack rapidly dividing cells. The cells that are responsible for growing hair are considered to be “rapidly dividing,” thus are very sensitive to these chemotherapy agents.
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*CDK2 is a positive regulator of the eukaryotic cell cycle progression and is a catalytic unit that helps the cell progress from the G1 phase to the S phase. CDK2 is thought to be a requirement in many cells for cell proliferation. This makes it an excellent protein to target to prevent CIA.
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*The representation displayed is that of cyclin-dependent kinase 2 (CDK2) interacting with an oxindole inhibitor. The ligand pictured is the <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Oxindole_inhibitor/2'>oxindole inhibitor</scene>, 4-(5-bromo-2-oxo-2h-indol-3-ylazo)- benzenesulfonamide. <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Cdk2/1'>CDK2</scene> is part of the Ser/Thr protein kinases.<ref>[http://www.ncbi.nlm.nih.gov/gene/1017]</ref>
*In the study “The Structure of Cyclin-Dependent Kinase 2 (CDK2) in Complex with an Oxindole Inhibitor,” researchers studied whether using a topical oxindole inhibitor would reduce the chemotherapy-induced alopecia (CIA). Alopecia is characterized by hair loss. By inhibiting the CDK2, the cell cycle is slowed and the sensitivity to the epithelium from many cell cycle-active antitumor agents is reduced. Thus, a reduction in hair loss can be possible. <ref>PMID: 11141566</ref>
*In the study “The Structure of Cyclin-Dependent Kinase 2 (CDK2) in Complex with an Oxindole Inhibitor,” researchers studied whether using a topical oxindole inhibitor would reduce the chemotherapy-induced alopecia (CIA). Alopecia is characterized by hair loss. By inhibiting the CDK2, the cell cycle is slowed and the sensitivity to the epithelium from many cell cycle-active antitumor agents is reduced. Thus, a reduction in hair loss can be possible. <ref>PMID: 11141566</ref>
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*The CDK2 is composed of a total of <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Secondary_structures/1'>7 alpha-helices and 6 beta-sheets</scene>.
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*The CDK2 is composed of a total of <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Secondary_structures/1'>7 alpha-helices and 6 beta-sheets</scene>. The oxindole inhibitor interacts with CDK2 through a small <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Binding_pocket/1'>binding pocket</scene> located at the <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site/1'>active site</scene>.
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*The oxindole inhibitor interacts with CDK2 through a small <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Binding_pocket/1'>binding pocket</scene> located at the <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site/1'>active site</scene>.
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*The oxindole inhbitor is able to interact with CDK2's active site through four important sets of <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Interactions/1'>interactions</scene>, thus slowing the cell cycle. The interactions include <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_phe80a/1'>Phe80A</scene> in a Pi-Pi, Pi-cation interaction, an interaction with <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_ile10a/3'>Ile10A</scene> in a hydrophobic interaction, and there are two sets of important hydrogen bonds: <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_leu_83a/1'>Leu83A</scene> and <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_asp86a/1'>Asp86A</scene>. These interactions help the oxindole inhibitor bind to CDK2 and help it compete with adenosine triphosphate (ATP).
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*The oxindole inhbitor is able to interact with CDK2's active site through four important sets of <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Interactions/1'>interactions</scene>, thus slowing the cell cycle. The interactions include <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_phe80a/1'>Phe80A</scene> in a Pi-Pi, Pi-cation interaction, an interaction with <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_ile10a/3'>Ile10A</scene> in a hydrophobic interaction, and there are two sets of important hydrogen bonds: <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_leu_83a/1'>Leu83A</scene> and <scene name='Sandbox_reserved_CDK2_Oxindole_Inhibitor/Active_site_asp86a/1'>Asp86A</scene>.
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*CCL64 cells were plated and Taxol, Etoposide, Cisplatin, 5FU, or Doxorubicin was added. Some of the cells were also treated with the oxindole inhibitor. All of the cells were then fixed and stained and the optical density was used to determine the number of stained cells and compared to one another. The results showed that all of the cells were able to resist the toxic effect of the chemotherapy agent; Etoposide to a lesser extent.
==References==
==References==
<references />
<references />

Revision as of 00:33, 8 October 2012

Cyclin-Dependend Kinase 2 (CDK2) in Complex with an Oxindole Inhibitor

Structure of CDK2 with 4-(5-bromo-2-oxo-2h-indol-3-ylazo)-benzenesulfonamide (PDB entry 1fvt)

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