Sandbox 32
From Proteopedia
(Difference between revisions)
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== '''Adenylate Kinase''' (PDB ID #: 1ake)== | == '''Adenylate Kinase''' (PDB ID #: 1ake)== | ||
| - | The <scene name='Sandbox_32/Chain_a/ | + | The <scene name='Sandbox_32/Chain_a/2'>A Chain</scene> by itself may be in a slightly different conformation than when it is <scene name='Sandbox_32/Both_chains/1'>attached</scene> to the B chain (as found in nature). |
| - | Adenylate Kinase contains both types of secondary structure, <scene name='Sandbox_32/Helices_sheets/ | + | Adenylate Kinase contains both types of secondary structure, <scene name='Sandbox_32/Helices_sheets/2'>alpha helices and beta sheets</scene>. In this scene, alpha helices are in light blue and beta sheets are in yellow. |
The <scene name='Sandbox_32/H_bonds_2/1'>hydrogen bonding</scene> highlighted in this scene shows us that... something something something. The beta sheets appear to be parallel, as the H-bonds are not all aligned in one direction. | The <scene name='Sandbox_32/H_bonds_2/1'>hydrogen bonding</scene> highlighted in this scene shows us that... something something something. The beta sheets appear to be parallel, as the H-bonds are not all aligned in one direction. | ||
Revision as of 00:30, 19 October 2012
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| Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013. |
Adenylate Kinase (PDB ID #: 1ake)
The by itself may be in a slightly different conformation than when it is to the B chain (as found in nature).
Adenylate Kinase contains both types of secondary structure, . In this scene, alpha helices are in light blue and beta sheets are in yellow.
The highlighted in this scene shows us that... something something something. The beta sheets appear to be parallel, as the H-bonds are not all aligned in one direction.
, highlighted here in pink, tend to be towards the inside of the molecule.
The , highlighted here in blue along with the transparent pink hydrophobic residues, are more towards the outside [is this actually true?]
also plays a big part in...
Sidechain and ligand ...
