Sandbox 37
From Proteopedia
(Difference between revisions)
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The <scene name='Sandbox_37/Matt_helix_hbonbds/1'>Hydrogen Bonds</scene> of chain A of the protein are highlighted in orange here. | The <scene name='Sandbox_37/Matt_helix_hbonbds/1'>Hydrogen Bonds</scene> of chain A of the protein are highlighted in orange here. | ||
| - | The <scene name='Sandbox_37/ | + | The <scene name='Sandbox_37/Matt_hydrophobic_good/1'>Hydrophobic interactions</scene> are shown here in red. |
The <scene name='Sandbox_37/Matt_hydrophilic/1'>Hydrophilic Interactions</scene> are shown here in black. | The <scene name='Sandbox_37/Matt_hydrophilic/1'>Hydrophilic Interactions</scene> are shown here in black. | ||
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The side chains that interact with the <scene name='Sandbox_37/Matt_ligand/1'>ligand</scene> are shown here in crimson. The interactions occur with the hydrophobic side chains. The rest of the protein is faded blue. | The side chains that interact with the <scene name='Sandbox_37/Matt_ligand/1'>ligand</scene> are shown here in crimson. The interactions occur with the hydrophobic side chains. The rest of the protein is faded blue. | ||
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| - | Copy and paste the following line where you want the scene link to appear (scroll down if needed) and edit the TextToBeDisplayed: | ||
The <scene name='Sandbox_37/Matt_catalytic_residues/1'>catalytic residues</scene> of this protein are shown here in lime green. | The <scene name='Sandbox_37/Matt_catalytic_residues/1'>catalytic residues</scene> of this protein are shown here in lime green. | ||
Revision as of 02:13, 19 October 2012
| Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013. |
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The protein is shown here with alpha helices (cyan) and beta sheets (green) surrounding the non-hydrolysable substrate analogue (orange).
The of the protein is shown here with alpha helices (green) and beta sheets (blue) highlighted appropriately.
The of chain A of the protein are highlighted in orange here.
The are shown here in red.
The are shown here in black.
The , which is water, is shown here in red. Water's primary location is on the outer parts of the protein, or the hydrophilic regions.
The side chains that interact with the are shown here in crimson. The interactions occur with the hydrophobic side chains. The rest of the protein is faded blue.
The of this protein are shown here in lime green.
