User:Karl Oberholser/Sandbox 1

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{{STRUCTURE_1uo2 | PDB=1uo2 | SCENE='User:Karl_Oberholser/Sandbox_1/Initial/2'}}
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{{STRUCTURE_1a7v | PDB=1a7v | SCENE=''}}
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Fresh molecule load
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/1'> test initial 1 calculate structure</scene> (select protein; calculate structure; cartoon; color structure; calculate hbonds structure)
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Fresh molecule load
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/2'> test initial 2 180 rotation in y axis</scene>
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Fresh molecule load
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/3'>initial 3 sec structure</scene>
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Fresh molecule load
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/4'>initial 4 calculate structure</scene> (select protein; calculate structure; cartoon; color structure; calculate hbonds structure)
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Started with initial/3 scene
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/5'>initial 5 bs cpk</scene>
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http://proteopedia.org/scripts/User:Karl_Oberholser/Sandbox_1/Initial/5.spt
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== Investigating Contact: ==
== Investigating Contact: ==
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Fresh molecule load
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/6'>initial 6 contact {:a} {:b} hbond plane</scene>
 
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Fresh molecule load
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/7'>initial 7 contact clashes {:a} {:b} clash trim</scene>
 
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Started with initial/5 scene
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Initial/9'>initial 9 contact clashes off;</scene>
 
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http://proteopedia.org/scripts/User:Karl_Oberholser/Sandbox_1/Initial/9.spt
 
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Fresh molecule load
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Contact_vdw/1'>contact vdw 1</scene> contact phobic {:a} {:b} vdw full
 
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Fresh molecule load
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Contact/1'>contact 1</scene> Leu heptads in spacefill
 
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Started with contact/1
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Contact_clash/1'>contact clash 1</scene> contact phobic2 {:a} {:b} clash full
 
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Started with contact/1
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Contact_hbond/1'>contact hbond 1</scene> contact hbond {:a} {:b} hbond connect
 
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Started with contact/1
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Contact_vdw/3'>contact vdw 3</scene> contact vdw {:a} {:b} vdw surface
 
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Started with contact/1
 
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<scene name='User:Karl_Oberholser/Sandbox_1/Contact_hbond/2'>contact hbond 2</scene> contact {:a} {:b} hbond surface
 
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Started with contact/1
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<scene name='User:Karl_Oberholser/Sandbox_1/Two_layers_contact/1'>test contact vdw</scene>
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<scene name='User:Karl_Oberholser/Sandbox_1/Contact_clash/2'>contact clash 2</scene> contact {:a} {:b} clash surface
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{{STRUCTURE_1mbo | PDB=1mbo | SCENE=}}
{{STRUCTURE_1mbo | PDB=1mbo | SCENE=}}

Revision as of 20:10, 19 October 2012


Template:STRUCTURE 1a7v

Investigating Contact:

Template:STRUCTURE 1mbo

Template:STRUCTURE 2wpy

Notes and References

Proteopedia Page Contributors and Editors (what is this?)

Karl Oberholser

Retrieved from "http://52.214.119.220/wiki/index.php/User:Karl_Oberholser/Sandbox_1"
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