1mkh
From Proteopedia
(New page: 200px<br /><applet load="1mkh" size="450" color="white" frame="true" align="right" spinBox="true" caption="1mkh, resolution 2.01Å" /> '''C-terminal domain of...) |
|||
| Line 1: | Line 1: | ||
| - | [[Image:1mkh.jpg|left|200px]]<br /><applet load="1mkh" size=" | + | [[Image:1mkh.jpg|left|200px]]<br /><applet load="1mkh" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1mkh, resolution 2.01Å" /> | caption="1mkh, resolution 2.01Å" /> | ||
'''C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi'''<br /> | '''C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi'''<br /> | ||
==Overview== | ==Overview== | ||
| - | The minimal polypeptide supporting full methionyl-tRNA synthetase (MetRS) | + | The minimal polypeptide supporting full methionyl-tRNA synthetase (MetRS) activity is composed of four domains: a catalytic Rossmann fold, a connective peptide, a KMSKS domain, and a C-terminal alpha helix bundle domain. The minimal MetRS behaves as a monomer. In several species, MetRS is a homodimer because of a C-terminal domain appended to the core polypeptide. Upon truncation of this C-terminal domain, subunits dissociate irreversibly. Here, the C-terminal domain of dimeric MetRS from Pyrococcus abyssi was isolated and studied. It displays nonspecific tRNA-binding properties and has a crystalline structure closely resembling that of Trbp111, a dimeric tRNA-binding protein found in many bacteria and archaea. The obtained 3D model was used to direct mutations against dimerization of Escherichia coli MetRS. Comparison of the resulting mutants to native and C-truncated MetRS shows that the presence of the appended C-domain improves tRNA(Met) binding affinity. However, dimer formation is required to evidence the gain in affinity. |
==About this Structure== | ==About this Structure== | ||
| - | 1MKH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Active as [http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] Full crystallographic information is available from [http:// | + | 1MKH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Active as [http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MKH OCA]. |
==Reference== | ==Reference== | ||
| Line 21: | Line 21: | ||
[[Category: dimerization domain]] | [[Category: dimerization domain]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:56:08 2008'' |
Revision as of 11:56, 21 February 2008
|
C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi
Overview
The minimal polypeptide supporting full methionyl-tRNA synthetase (MetRS) activity is composed of four domains: a catalytic Rossmann fold, a connective peptide, a KMSKS domain, and a C-terminal alpha helix bundle domain. The minimal MetRS behaves as a monomer. In several species, MetRS is a homodimer because of a C-terminal domain appended to the core polypeptide. Upon truncation of this C-terminal domain, subunits dissociate irreversibly. Here, the C-terminal domain of dimeric MetRS from Pyrococcus abyssi was isolated and studied. It displays nonspecific tRNA-binding properties and has a crystalline structure closely resembling that of Trbp111, a dimeric tRNA-binding protein found in many bacteria and archaea. The obtained 3D model was used to direct mutations against dimerization of Escherichia coli MetRS. Comparison of the resulting mutants to native and C-truncated MetRS shows that the presence of the appended C-domain improves tRNA(Met) binding affinity. However, dimer formation is required to evidence the gain in affinity.
About this Structure
1MKH is a Single protein structure of sequence from Pyrococcus abyssi. Active as Methionine--tRNA ligase, with EC number 6.1.1.10 Full crystallographic information is available from OCA.
Reference
Structure and function of the C-terminal domain of methionyl-tRNA synthetase., Crepin T, Schmitt E, Blanquet S, Mechulam Y, Biochemistry. 2002 Oct 29;41(43):13003-11. PMID:12390027
Page seeded by OCA on Thu Feb 21 13:56:08 2008
