1pjl
From Proteopedia
(New page: 200px<br /> <applet load="1pjl" size="450" color="white" frame="true" align="right" spinBox="true" caption="1pjl, resolution 2.9Å" /> '''Crystal structure of...) |
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| - | [[Image:1pjl.gif|left|200px]]<br /> | + | [[Image:1pjl.gif|left|200px]]<br /><applet load="1pjl" size="350" color="white" frame="true" align="right" spinBox="true" |
| - | <applet load="1pjl" size=" | + | |
caption="1pjl, resolution 2.9Å" /> | caption="1pjl, resolution 2.9Å" /> | ||
'''Crystal structure of human m-NAD-ME in ternary complex with NAD and Lu3+'''<br /> | '''Crystal structure of human m-NAD-ME in ternary complex with NAD and Lu3+'''<br /> | ||
==Overview== | ==Overview== | ||
| - | The catalytic activity of malic enzyme (ME), a member of a new class of | + | The catalytic activity of malic enzyme (ME), a member of a new class of oxidative decarboxylases, requires the presence of divalent cations (Mn(2+), Mg(2+), and others). The crystal structure at 2.9 A resolution of human mitochondrial NAD(+)-dependent malic enzyme in a ternary complex with NAD(+) and the lanthanide ion Lu(3+), which has similar radius as Mn(2+), reveals a new conformation of the enzyme. The active site in this ternary complex is in an open form, while the organization of the tetramer of the enzyme actually resembles that with a closed active site. The Lu(3+) ion is bound to the enzyme at the same site as Mn(2+). Kinetic studies showed that Lu(3+) is a potent inhibitor of both the human NAD(P)(+)-dependent ME and the NADP(+)-dependent ME from pigeon liver, and is competitive with respect to the divalent cation, consistent with the structural information. |
==Disease== | ==Disease== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1PJL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with LU and NAD as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] Full crystallographic information is available from [http:// | + | 1PJL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=LU:'>LU</scene> and <scene name='pdbligand=NAD:'>NAD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PJL OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Batra, R.]] | [[Category: Batra, R.]] | ||
| - | [[Category: Chang, G | + | [[Category: Chang, G G.]] |
| - | [[Category: Floyd, D | + | [[Category: Floyd, D L.]] |
| - | [[Category: Hung, H | + | [[Category: Hung, H C.]] |
[[Category: Tong, L.]] | [[Category: Tong, L.]] | ||
[[Category: Yang, Z.]] | [[Category: Yang, Z.]] | ||
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[[Category: oxidoreductase]] | [[Category: oxidoreductase]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:29:27 2008'' |
Revision as of 12:29, 21 February 2008
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Crystal structure of human m-NAD-ME in ternary complex with NAD and Lu3+
Contents |
Overview
The catalytic activity of malic enzyme (ME), a member of a new class of oxidative decarboxylases, requires the presence of divalent cations (Mn(2+), Mg(2+), and others). The crystal structure at 2.9 A resolution of human mitochondrial NAD(+)-dependent malic enzyme in a ternary complex with NAD(+) and the lanthanide ion Lu(3+), which has similar radius as Mn(2+), reveals a new conformation of the enzyme. The active site in this ternary complex is in an open form, while the organization of the tetramer of the enzyme actually resembles that with a closed active site. The Lu(3+) ion is bound to the enzyme at the same site as Mn(2+). Kinetic studies showed that Lu(3+) is a potent inhibitor of both the human NAD(P)(+)-dependent ME and the NADP(+)-dependent ME from pigeon liver, and is competitive with respect to the divalent cation, consistent with the structural information.
Disease
Known disease associated with this structure: Epilepsy, idopathic generalized, susceptibility to OMIM:[154270]
About this Structure
1PJL is a Single protein structure of sequence from Homo sapiens with and as ligands. Active as Malate dehydrogenase (oxaloacetate-decarboxylating), with EC number 1.1.1.38 Full crystallographic information is available from OCA.
Reference
Potent and competitive inhibition of malic enzymes by lanthanide ions., Yang Z, Batra R, Floyd DL, Hung HC, Chang GG, Tong L, Biochem Biophys Res Commun. 2000 Aug 2;274(2):440-4. PMID:10913357
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