Ribosomal protein S10

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Revision as of 11:00, 14 November 2012

Crystal Structure of Ribosomal protein S10 from 2zm6, chain J

Ribosomal protein S10 (RPS10) is one of the 22 proteins which belong to the small subunit of the bacterial ribosome. It functions in binding tRNA to the ribosome and operates as a transcriptional elongation factor. The images at the left and at the right correspond to one representative RPS10, i.e. the crystal structure of Ribosomal protein S10 from Thermus thermophilus (2zm6, chain J).

1 3D Structures of Ribosomal protein S10

3D Structures of Ribosomal protein S10

Update July 2012

S10 + Protein

3imq, 3d3b, 3d3c - EcRPS10 +NUSB - Escherichia coli
3r2c, 3r2d – RPS10 + NUSB + RNA – Aquifex aeolicus

S10 in small ribosomal subunit

2zm6, 1n36, 1j5e, 3oto - TtRPS10 in 30S ribosomal subunit+THX+16S RRNA – Thermus thermophilus
2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3pyn, 3pyq, 3pys, 3pyu - TtRPS10 in 30S ribosomal subunit+16S RRNA+RNA fragment
3kc4 – EcRPS10 in 30S ribosomal subunit
3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3or9, 3ora - EcRPS10 in 30S ribosomal subunit+16S RRNA
1i94, 1fka, 3uxs, 3uxt - TtRPS10 in 30S ribosomal subunit+16S RRNA
1p87, 1p6g - EcRPS10 in 30S ribosomal subunit+16S RRNA – Cryo-EM
3bbn - RPS10 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach

S10 in small + large ribosomal subunit

1ml5 - EcRPS10 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM

S10 in small ribosomal subunit+ chain release factor

3mr8, 3ms0 – TtRPS10 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA
3d5a, 3d5c - TtRPS10 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
3zvo – TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3
2b64 - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
2b9m - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
2x9r, 2x9t, 2wh1, 2wh3 - TtRPS10 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA
3f1e, 3f1g - TtRPS10 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
3uoq – EcRPS10 + 16S RRNA + mRNA + chain release factor 3

S10 in small ribosomal subunit+tRNA+mRNA

2hgi - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
2hgp - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
3t1h, 3t1y - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA
3tvf, 3tvg, 3uyd, 3uyf - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA
3uz6, 3uz7, 3uzg, 3uzi - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA
2i2p, 2i2u - EcRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2hgr - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
1yl4 – TtRPS10 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
1pns - EcRPS10 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA
3j0u, 3j0v, 3j0x, 3j0z, 3j10 – EcRPS10 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM
3j13 – EcRPS10 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM
1xnq, 1xnr - TtRPS10 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA

S10 in small ribosomal subunit+A-site tRNA

2uxd, 2uxc - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
1n32, 1n33 - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
1n34 - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
1xmo, 1xmq - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
2uxb - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA

S10 in small ribosomal subunit+P-site tRNA

3i8g - TtRPS10 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
3i8h, 3i9b, 3i9d - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA
1ibk - TtRPS10 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
2wwl - EcRPS10 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli
3i1q - EcRPS10 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA
3i1s, 3i1z, 3i21 - EcRPS10 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA

S10 in small ribosomal subunit+A-site tRNA+P-site tRNA

1ibl, 1ibm - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNAv

S10 in small ribosomal subunit+P-site tRNA+E-site tRNA

2ow8 - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
2b9o - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
2qnh - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA
2wdg, 2wdh, 2wdk, 2wdm - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe

S10 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA

2gy9, 2gyb - EcRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM
1jgo, 1jgp, 1jgq, 1gix - TtRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
3e1a, 3e1c - EcRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA

S10 in small ribosomal subunit + antibiotics

1i95, 1i97,2hhh, 2f4v, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4 - TtRPS10 in 30S ribosomal subunit+16S RRNA+antibiotic
1hnw, 1hnx, 1hnz, 1fjg - TtRPS10 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic
2qbb, 2qb9, 1vs5, 1vs7, 2qan, 2qal, 2qou, 2qow, 2qoy, 2qp0, 2z4k, 2z4m, 3oaq, 3oar, 3ofa, 3ofb, 3ofo, 3ofp, 3ofx, 3ofy - EcRPS10 in 30S ribosomal subunit+16S RRNA+antibiotic
2j00, 2j02 - TtRPS10 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA
3knj, 3knh - TtRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin
3knl, 3knn - TtRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin
3uz3, 3uz4 - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin
3uzl, 3uzm - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin

S10 in small ribosomal subunit + ribosome recycling factor

2qbd, 2qbf – EcRPS10 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor
3r8n, 3r8o – EcRPS3 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA
2qbh, 2qbj - EcRPS10 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin
2v46, 2v48 - TtRPS10 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet

S10 in small ribosomal subunit + elongation factor

2wri, 2wrk - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G
2wrn, 2wrq - TtRPS10 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
3fic - TtRPS10 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
4abr – TtRPS10 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU
3izv – EcRPS10 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU
3j18 - EcRPS10 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM
3izw – EcRPS10 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU
2y0u, 2y0w, 2y0y, 2y10, 2y12, 2y14, 2y16, 2y18 - TtRPS10 in 30S subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU
3fih - EcRPS10 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU
3huw, 3huy - TtRPS10 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P

S10 in small ribosomal subunit + translation initiation factor

1i96 - TtRPS10 in 30S ribosomal subunit+THX+IF3+16S RRNA
1hr0 - TtRPS10 in 30S ribosomal subunit+THX+IF+16S RRNA

S10 in small ribosomal subunit + various proteins

3kiq, 3kis, 3kiu, 3kix - TtRPS10 in 30S ribosomal subunit+toxin RelE+16S RRNA
4dh9, 4dhb - TtRPS10 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ
1voq, 1vos, 1vov, 1vox, 1voz - EcRPS10 in 30S ribosomal subunit+protein Y+16S RRNA
2xfz, 2xg1 - TtRPS10 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA
3j00 – EcRPS10 + 16S RRNA + FTSQ + apolipoprotein A-I
2xzm, 2xzn - RPS10 in 40S subunit+18S RRNA+RACK1 - Tetrahymena thermophila
2ykr – EcRPS10 + 16S RRNA + GMPPNP + GTPase RSGA
4a2i – EcRPS10 + 16S RRNA + GTPase RSGA – Cryo EM
4adv - EcRPS10 + 16S RRNA + methyltransferase – Cryo EM
3iz6 - RPS10 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM
3izb - yRPS10 in 40S ribosomal subunit+ RACK1 – yeast - Cryo-EM
3u5c, 3u5g - yRPS10 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

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	[[Image:RPS10.png\|left\|200px\|thumb\|Crystal Structure of Ribosomal protein S10 from [[2zm6]], chain J]]		[[Image:RPS10.png\|left\|200px\|thumb\|Crystal Structure of Ribosomal protein S10 from [[2zm6]], chain J]]
-	{{~~STRUCTURE_2zm6~~\| PDB=~~2zm6~~ \| SIZE=400\| SCENE=~~Ribosomal_protein_S10/Cv/2~~ \|right\|CAPTION=Ribosomal protein S10 from [[~~2zm6~~]]~~, chain J~~ }}	+	{{STRUCTURE_3d3b\| PDB=3d3b \| SIZE=400\| SCENE=\|right\|CAPTION=Ribosomal protein S10 from [[3d3b]]}}