1rhc
From Proteopedia
(New page: 200px<br /><applet load="1rhc" size="450" color="white" frame="true" align="right" spinBox="true" caption="1rhc, resolution 1.80Å" /> '''F420-dependent secon...) |
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| - | [[Image:1rhc.jpg|left|200px]]<br /><applet load="1rhc" size=" | + | [[Image:1rhc.jpg|left|200px]]<br /><applet load="1rhc" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1rhc, resolution 1.80Å" /> | caption="1rhc, resolution 1.80Å" /> | ||
'''F420-dependent secondary alcohol dehydrogenase in complex with an F420-acetone adduct'''<br /> | '''F420-dependent secondary alcohol dehydrogenase in complex with an F420-acetone adduct'''<br /> | ||
==Overview== | ==Overview== | ||
| - | F(420)-dependent secondary alcohol dehydrogenase (Adf) from methanogenic | + | F(420)-dependent secondary alcohol dehydrogenase (Adf) from methanogenic archaea is a member of the growing bacterial luciferase family which are all TIM barrel enzymes, most of which with an unusual nonprolyl cis peptide bond. We report here on the crystal structure of Adf from Methanoculleus thermophilicus at 1.8 A resolution in complex with a F(420)-acetone adduct. The knowledge of the F(420) binding mode in Adf provides the molecular basis for modeling F(420) and FMN into the other enzymes of the family. A nonprolyl cis peptide bond was identified as an essential part of a bulge that serves as backstop at the Re-face of F(420) to keep it in a bent conformation. The acetone moiety of the F(420)-acetone adduct is positioned at the Si-face of F(420) deeply buried inside the protein. Isopropanol can be reliably modeled and a hydrogen transfer mechanism postulated. His39 and Glu108 can be identified as key players for binding of the acetone or isopropanol oxygens and for catalysis. |
==About this Structure== | ==About this Structure== | ||
| - | 1RHC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanoculleus_thermophilus Methanoculleus thermophilus] with CL, K, F42 and ACN as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | + | 1RHC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanoculleus_thermophilus Methanoculleus thermophilus] with <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=K:'>K</scene>, <scene name='pdbligand=F42:'>F42</scene> and <scene name='pdbligand=ACN:'>ACN</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RHC OCA]. |
==Reference== | ==Reference== | ||
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[[Category: Methanoculleus thermophilus]] | [[Category: Methanoculleus thermophilus]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| - | [[Category: Aufhammer, S | + | [[Category: Aufhammer, S W.]] |
[[Category: Berk, H.]] | [[Category: Berk, H.]] | ||
[[Category: Ermler, U.]] | [[Category: Ermler, U.]] | ||
[[Category: Shima, S.]] | [[Category: Shima, S.]] | ||
| - | [[Category: Thauer, R | + | [[Category: Thauer, R K.]] |
[[Category: Warkentin, E.]] | [[Category: Warkentin, E.]] | ||
[[Category: ACN]] | [[Category: ACN]] | ||
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[[Category: beta)8 barrel]] | [[Category: beta)8 barrel]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:50:56 2008'' |
Revision as of 12:50, 21 February 2008
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F420-dependent secondary alcohol dehydrogenase in complex with an F420-acetone adduct
Overview
F(420)-dependent secondary alcohol dehydrogenase (Adf) from methanogenic archaea is a member of the growing bacterial luciferase family which are all TIM barrel enzymes, most of which with an unusual nonprolyl cis peptide bond. We report here on the crystal structure of Adf from Methanoculleus thermophilicus at 1.8 A resolution in complex with a F(420)-acetone adduct. The knowledge of the F(420) binding mode in Adf provides the molecular basis for modeling F(420) and FMN into the other enzymes of the family. A nonprolyl cis peptide bond was identified as an essential part of a bulge that serves as backstop at the Re-face of F(420) to keep it in a bent conformation. The acetone moiety of the F(420)-acetone adduct is positioned at the Si-face of F(420) deeply buried inside the protein. Isopropanol can be reliably modeled and a hydrogen transfer mechanism postulated. His39 and Glu108 can be identified as key players for binding of the acetone or isopropanol oxygens and for catalysis.
About this Structure
1RHC is a Single protein structure of sequence from Methanoculleus thermophilus with , , and as ligands. Full crystallographic information is available from OCA.
Reference
Coenzyme binding in F420-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family., Aufhammer SW, Warkentin E, Berk H, Shima S, Thauer RK, Ermler U, Structure. 2004 Mar;12(3):361-70. PMID:15016352
Page seeded by OCA on Thu Feb 21 14:50:56 2008
Categories: Methanoculleus thermophilus | Single protein | Aufhammer, S W. | Berk, H. | Ermler, U. | Shima, S. | Thauer, R K. | Warkentin, E. | ACN | CL | F42 | K | (alpha | Beta)8 barrel
